:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-specond'
.. highlight: bash

bioconductor-specond
====================

.. conda:recipe:: bioconductor-specond
   :replaces_section_title:
   :noindex:

   Condition specific detection from expression data

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/SpeCond.html
   :license: LGPL (>=2)
   :recipe: /`bioconductor-specond <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-specond>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-specond/meta.yaml>`_
   :links: biotools: :biotools:`specond`, doi: :doi:`10.1186/gb-2011-12-12-413`

   This package performs a gene expression data analysis to detect condition\-specific genes. Such genes are significantly up\- or down\-regulated in a small number of conditions. It does so by fitting a mixture of normal distributions to the expression values. Conditions can be environmental conditions\, different tissues\, organs or any other sources that you wish to compare in terms of gene expression.


.. conda:package:: bioconductor-specond

   |downloads_bioconductor-specond| |docker_bioconductor-specond|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.48.0-0</code>,  <code>1.46.0-0</code>,  <code>1.44.0-1</code>,  <code>1.44.0-0</code>,  <code>1.42.0-0</code>,  <code>1.40.0-0</code>,  <code>1.38.0-1</code>,  <code>1.36.0-0</code>,  <code>1.34.0-0</code>,  </span></summary>
      

      ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-1``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.54.0,<2.55.0``
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-fields: 
   :depends r-hwriter: ``>=1.1``
   :depends r-mclust: ``>=3.3.1``
   :depends r-rcolorbrewer: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-specond

   and update with::

      conda update bioconductor-specond

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-specond:<tag>

   (see `bioconductor-specond/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-specond| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-specond.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-specond
   :alt:   (downloads)
.. |docker_bioconductor-specond| image:: https://quay.io/repository/biocontainers/bioconductor-specond/status
   :target: https://quay.io/repository/biocontainers/bioconductor-specond
.. _`bioconductor-specond/tags`: https://quay.io/repository/biocontainers/bioconductor-specond?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-specond";
        var versions = ["1.48.0","1.46.0","1.44.0","1.44.0","1.42.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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