:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-suitor'
.. highlight: bash

bioconductor-suitor
===================

.. conda:recipe:: bioconductor-suitor
   :replaces_section_title:
   :noindex:

   Selecting the number of mutational signatures through cross\-validation

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/SUITOR.html
   :license: GPL-2
   :recipe: /`bioconductor-suitor <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-suitor>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-suitor/meta.yaml>`_

   An unsupervised cross\-validation method to select the optimal number of mutational signatures. A data set of mutational counts is split into training and validation data.Signatures are estimated in the training data and then used to predict the mutations in the validation data.


.. conda:package:: bioconductor-suitor

   |downloads_bioconductor-suitor| |docker_bioconductor-suitor|

   :versions:
      
      

      ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0``
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ggplot2: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-suitor

   and update with::

      mamba update bioconductor-suitor

  To create a new environment, run::

      mamba create --name myenvname bioconductor-suitor

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-suitor:<tag>

   (see `bioconductor-suitor/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-suitor| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-suitor.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-suitor
   :alt:   (downloads)
.. |docker_bioconductor-suitor| image:: https://quay.io/repository/biocontainers/bioconductor-suitor/status
   :target: https://quay.io/repository/biocontainers/bioconductor-suitor
.. _`bioconductor-suitor/tags`: https://quay.io/repository/biocontainers/bioconductor-suitor?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-suitor";
        var versions = ["1.4.0","1.2.0","1.0.0","1.0.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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