:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-tabulamurissenisdata' .. highlight: bash bioconductor-tabulamurissenisdata ================================= .. conda:recipe:: bioconductor-tabulamurissenisdata :replaces_section_title: :noindex: Bulk and single\-cell RNA\-seq data from the Tabula Muris Senis project :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/TabulaMurisSenisData.html :license: MIT + file LICENSE :recipe: /`bioconductor-tabulamurissenisdata `_/`meta.yaml `_ This package provides access to RNA\-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing\, collected in the form of SingleCellExperiment objects. .. conda:package:: bioconductor-tabulamurissenisdata |downloads_bioconductor-tabulamurissenisdata| |docker_bioconductor-tabulamurissenisdata| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-1``,  ``1.0.0-0`` :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-experimenthub: ``>=2.10.0,<2.11.0`` :depends bioconductor-hdf5array: ``>=1.30.0,<1.31.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-gdata: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-tabulamurissenisdata and update with:: mamba update bioconductor-tabulamurissenisdata To create a new environment, run:: mamba create --name myenvname bioconductor-tabulamurissenisdata with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-tabulamurissenisdata: (see `bioconductor-tabulamurissenisdata/tags`_ for valid values for ````) .. |downloads_bioconductor-tabulamurissenisdata| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-tabulamurissenisdata.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-tabulamurissenisdata :alt: (downloads) .. |docker_bioconductor-tabulamurissenisdata| image:: https://quay.io/repository/biocontainers/bioconductor-tabulamurissenisdata/status :target: https://quay.io/repository/biocontainers/bioconductor-tabulamurissenisdata .. _`bioconductor-tabulamurissenisdata/tags`: https://quay.io/repository/biocontainers/bioconductor-tabulamurissenisdata?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tabulamurissenisdata/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-tabulamurissenisdata/README.html