:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-tigre' .. highlight: bash bioconductor-tigre ================== .. conda:recipe:: bioconductor-tigre :replaces_section_title: :noindex: Transcription factor Inference through Gaussian process Reconstruction of Expression :homepage: https://bioconductor.org/packages/3.14/bioc/html/tigre.html :license: AGPL-3 :recipe: /`bioconductor-tigre `_/`meta.yaml `_ :links: biotools: :biotools:`tigre` The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor \(TF\) protein concentrations from expression measurements of known target genes\, or for ranking candidate targets of a TF. .. conda:package:: bioconductor-tigre |downloads_bioconductor-tigre| |docker_bioconductor-tigre| :versions: .. raw:: html
1.48.0-11.48.0-01.46.0-01.44.0-11.44.0-01.42.0-01.40.0-01.38.0-11.36.0-0 ``1.48.0-1``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-1``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0`` .. raw:: html
:depends bioconductor-annotate: ``>=1.72.0,<1.73.0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dbi: :depends r-gplots: :depends r-rsqlite: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-tigre and update with:: conda update bioconductor-tigre or use the docker container:: docker pull quay.io/biocontainers/bioconductor-tigre: (see `bioconductor-tigre/tags`_ for valid values for ````) .. |downloads_bioconductor-tigre| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-tigre.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-tigre :alt: (downloads) .. |docker_bioconductor-tigre| image:: https://quay.io/repository/biocontainers/bioconductor-tigre/status :target: https://quay.io/repository/biocontainers/bioconductor-tigre .. _`bioconductor-tigre/tags`: https://quay.io/repository/biocontainers/bioconductor-tigre?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-tigre/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-tigre/README.html