:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-tigre'
.. highlight: bash

bioconductor-tigre
==================

.. conda:recipe:: bioconductor-tigre
   :replaces_section_title:
   :noindex:

   Transcription factor Inference through Gaussian process Reconstruction of Expression

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/tigre.html
   :license: AGPL-3
   :recipe: /`bioconductor-tigre <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tigre>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tigre/meta.yaml>`_
   :links: biotools: :biotools:`tigre`

   The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor \(TF\) protein concentrations from expression measurements of known target genes\, or for ranking candidate targets of a TF.


.. conda:package:: bioconductor-tigre

   |downloads_bioconductor-tigre| |docker_bioconductor-tigre|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.48.0-1</code>,  <code>1.48.0-0</code>,  <code>1.46.0-0</code>,  <code>1.44.0-1</code>,  <code>1.44.0-0</code>,  <code>1.42.0-0</code>,  <code>1.40.0-0</code>,  <code>1.38.0-1</code>,  <code>1.36.0-0</code>,  </span></summary>
      

      ``1.48.0-1``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-1``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotate: ``>=1.72.0,<1.73.0``
   :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0``
   :depends bioconductor-biobase: ``>=2.54.0,<2.55.0``
   :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=10.3.0``
   :depends liblapack: ``>=3.8.0,<4.0a0``
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-dbi: 
   :depends r-gplots: 
   :depends r-rsqlite: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-tigre

   and update with::

      conda update bioconductor-tigre

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-tigre:<tag>

   (see `bioconductor-tigre/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-tigre| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-tigre.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-tigre
   :alt:   (downloads)
.. |docker_bioconductor-tigre| image:: https://quay.io/repository/biocontainers/bioconductor-tigre/status
   :target: https://quay.io/repository/biocontainers/bioconductor-tigre
.. _`bioconductor-tigre/tags`: https://quay.io/repository/biocontainers/bioconductor-tigre?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-tigre";
        var versions = ["1.48.0","1.48.0","1.46.0","1.44.0","1.44.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-tigre/README.html