:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-transformgampoi' .. highlight: bash bioconductor-transformgampoi ============================ .. conda:recipe:: bioconductor-transformgampoi :replaces_section_title: :noindex: Variance Stabilizing Transformation for Gamma\-Poisson Models :homepage: https://bioconductor.org/packages/3.14/bioc/html/transformGamPoi.html :license: GPL-3 :recipe: /`bioconductor-transformgampoi `_/`meta.yaml `_ Variance\-stabilizing transformations help with the analysis of heteroskedastic data \(i.e.\, data where the variance is not constant\, like count data\). This package provide two types of variance stabilizing transformations\: \(1\) methods based on the delta method \(e.g.\, \'acosh\'\, \'log\(x\+1\)\'\)\, \(2\) model residual based \(Pearson and randomized quantile residuals\). .. conda:package:: bioconductor-transformgampoi |downloads_bioconductor-transformgampoi| |docker_bioconductor-transformgampoi| :versions: ``1.0.0-0`` :depends bioconductor-delayedarray: ``>=0.20.0,<0.21.0`` :depends bioconductor-glmgampoi: ``>=1.6.0,<1.7.0`` :depends bioconductor-hdf5array: ``>=1.22.0,<1.23.0`` :depends bioconductor-matrixgenerics: ``>=1.6.0,<1.7.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-matrix: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-transformgampoi and update with:: conda update bioconductor-transformgampoi or use the docker container:: docker pull quay.io/biocontainers/bioconductor-transformgampoi: (see `bioconductor-transformgampoi/tags`_ for valid values for ````) .. |downloads_bioconductor-transformgampoi| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-transformgampoi.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-transformgampoi :alt: (downloads) .. |docker_bioconductor-transformgampoi| image:: https://quay.io/repository/biocontainers/bioconductor-transformgampoi/status :target: https://quay.io/repository/biocontainers/bioconductor-transformgampoi .. _`bioconductor-transformgampoi/tags`: https://quay.io/repository/biocontainers/bioconductor-transformgampoi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-transformgampoi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-transformgampoi/README.html