:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-transformgampoi' .. highlight: bash bioconductor-transformgampoi ============================ .. conda:recipe:: bioconductor-transformgampoi :replaces_section_title: :noindex: Variance Stabilizing Transformation for Gamma\-Poisson Models :homepage: https://bioconductor.org/packages/3.18/bioc/html/transformGamPoi.html :license: GPL-3 :recipe: /`bioconductor-transformgampoi `_/`meta.yaml `_ Variance\-stabilizing transformations help with the analysis of heteroskedastic data \(i.e.\, data where the variance is not constant\, like count data\). This package provide two types of variance stabilizing transformations\: \(1\) methods based on the delta method \(e.g.\, \'acosh\'\, \'log\(x\+1\)\'\)\, \(2\) model residual based \(Pearson and randomized quantile residuals\). .. conda:package:: bioconductor-transformgampoi |downloads_bioconductor-transformgampoi| |docker_bioconductor-transformgampoi| :versions: ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.0.0-0`` :depends bioconductor-delayedarray: ``>=0.28.0,<0.29.0`` :depends bioconductor-delayedarray: ``>=0.28.0,<0.29.0a0`` :depends bioconductor-glmgampoi: ``>=1.14.0,<1.15.0`` :depends bioconductor-glmgampoi: ``>=1.14.0,<1.15.0a0`` :depends bioconductor-hdf5array: ``>=1.30.0,<1.31.0`` :depends bioconductor-hdf5array: ``>=1.30.0,<1.31.0a0`` :depends bioconductor-matrixgenerics: ``>=1.14.0,<1.15.0`` :depends bioconductor-matrixgenerics: ``>=1.14.0,<1.15.0a0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-matrix: :depends r-rcpp: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-transformgampoi and update with:: mamba update bioconductor-transformgampoi To create a new environment, run:: mamba create --name myenvname bioconductor-transformgampoi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-transformgampoi: (see `bioconductor-transformgampoi/tags`_ for valid values for ````) .. |downloads_bioconductor-transformgampoi| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-transformgampoi.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-transformgampoi :alt: (downloads) .. |docker_bioconductor-transformgampoi| image:: https://quay.io/repository/biocontainers/bioconductor-transformgampoi/status :target: https://quay.io/repository/biocontainers/bioconductor-transformgampoi .. _`bioconductor-transformgampoi/tags`: https://quay.io/repository/biocontainers/bioconductor-transformgampoi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-transformgampoi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-transformgampoi/README.html