:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-tximeta'
.. highlight: bash

bioconductor-tximeta
====================

.. conda:recipe:: bioconductor-tximeta
   :replaces_section_title:
   :noindex:

   Transcript Quantification Import with Automatic Metadata

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/tximeta.html
   :license: GPL-2
   :recipe: /`bioconductor-tximeta <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tximeta>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-tximeta/meta.yaml>`_

   Transcript quantification import from Salmon and other quantifiers with automatic attachment of transcript ranges and release information\, and other associated metadata. De novo transcriptomes can be linked to the appropriate sources with linkedTxomes and shared for computational reproducibility.


.. conda:package:: bioconductor-tximeta

   |downloads_bioconductor-tximeta| |docker_bioconductor-tximeta|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.20.1-1</code>,  <code>1.20.1-0</code>,  <code>1.18.0-0</code>,  <code>1.16.0-0</code>,  <code>1.14.0-0</code>,  <code>1.12.0-0</code>,  <code>1.10.0-0</code>,  <code>1.8.4-0</code>,  <code>1.8.0-0</code>,  </span></summary>
      

      ``1.20.1-1``,  ``1.20.1-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.4-0``,  ``1.8.0-0``,  ``1.6.3-0``,  ``1.6.2-0``,  ``1.4.3-0``,  ``1.4.0-0``,  ``1.2.2-0``,  ``1.0.3-0``,  ``1.0.1-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0``
   :depends bioconductor-annotationhub: ``>=3.10.0,<3.11.0``
   :depends bioconductor-biocfilecache: ``>=2.10.0,<2.11.0``
   :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0``
   :depends bioconductor-ensembldb: ``>=2.26.0,<2.27.0``
   :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0``
   :depends bioconductor-genomicfeatures: ``>=1.54.0,<1.55.0``
   :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-rhdf5: ``>=2.0.0,<2.46.1``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends bioconductor-tximport: ``>=1.30.0,<1.31.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-jsonlite: 
   :depends r-matrix: 
   :depends r-tibble: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-tximeta

   and update with::

      mamba update bioconductor-tximeta

  To create a new environment, run::

      mamba create --name myenvname bioconductor-tximeta

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-tximeta:<tag>

   (see `bioconductor-tximeta/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-tximeta| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-tximeta.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-tximeta
   :alt:   (downloads)
.. |docker_bioconductor-tximeta| image:: https://quay.io/repository/biocontainers/bioconductor-tximeta/status
   :target: https://quay.io/repository/biocontainers/bioconductor-tximeta
.. _`bioconductor-tximeta/tags`: https://quay.io/repository/biocontainers/bioconductor-tximeta?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-tximeta";
        var versions = ["1.20.1","1.20.1","1.18.0","1.16.0","1.14.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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