:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-variantannotation'
.. highlight: bash

bioconductor-variantannotation
==============================

.. conda:recipe:: bioconductor-variantannotation
   :replaces_section_title:
   :noindex:

   Annotation of Genetic Variants

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/VariantAnnotation.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-variantannotation <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-variantannotation>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-variantannotation/meta.yaml>`_
   :links: biotools: :biotools:`variantannotation`

   Annotate variants\, compute amino acid coding changes\, predict coding outcomes.


.. conda:package:: bioconductor-variantannotation

   |downloads_bioconductor-variantannotation| |docker_bioconductor-variantannotation|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.34.0-0</code>,  <code>1.32.0-0</code>,  <code>1.30.1-0</code>,  <code>1.30.0-0</code>,  <code>1.28.3-0</code>,  <code>1.26.1-0</code>,  <code>1.24.1-0</code>,  <code>1.22.3-0</code>,  <code>1.20.3-0</code>,  </span></summary>
      

      ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.1-0``,  ``1.30.0-0``,  ``1.28.3-0``,  ``1.26.1-0``,  ``1.24.1-0``,  ``1.22.3-0``,  ``1.20.3-0``,  ``1.18.7-0``,  ``1.16.4-0``,  ``1.16.3-0``,  ``1.16.1-0``,  ``1.16.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-annotationdbi: ``>=1.50.0,<1.51.0``
   :depends bioconductor-biobase: ``>=2.48.0,<2.49.0``
   :depends bioconductor-biocgenerics: ``>=0.34.0,<0.35.0``
   :depends bioconductor-biostrings: ``>=2.56.0,<2.57.0``
   :depends bioconductor-bsgenome: ``>=1.56.0,<1.57.0``
   :depends bioconductor-genomeinfodb: ``>=1.24.0,<1.25.0``
   :depends bioconductor-genomicfeatures: ``>=1.40.0,<1.41.0``
   :depends bioconductor-genomicranges: ``>=1.40.0,<1.41.0``
   :depends bioconductor-iranges: ``>=2.22.0,<2.23.0``
   :depends bioconductor-rhtslib: ``>=1.20.0,<1.21.0``
   :depends bioconductor-rsamtools: ``>=2.4.0,<2.5.0``
   :depends bioconductor-rtracklayer: ``>=1.48.0,<1.49.0``
   :depends bioconductor-s4vectors: ``>=0.26.0,<0.27.0``
   :depends bioconductor-summarizedexperiment: ``>=1.18.0,<1.19.0``
   :depends bioconductor-xvector: ``>=0.28.0,<0.29.0``
   :depends bioconductor-zlibbioc: ``>=1.34.0,<1.35.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=7.3.0``
   :depends liblapack: ``>=3.8.0,<3.9.0a0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-dbi: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-variantannotation

   and update with::

      conda update bioconductor-variantannotation

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-variantannotation:<tag>

   (see `bioconductor-variantannotation/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-variantannotation| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-variantannotation.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-variantannotation
   :alt:   (downloads)
.. |docker_bioconductor-variantannotation| image:: https://quay.io/repository/biocontainers/bioconductor-variantannotation/status
   :target: https://quay.io/repository/biocontainers/bioconductor-variantannotation
.. _`bioconductor-variantannotation/tags`: https://quay.io/repository/biocontainers/bioconductor-variantannotation?tab=tags







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