:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-waddr' .. highlight: bash bioconductor-waddr ================== .. conda:recipe:: bioconductor-waddr :replaces_section_title: :noindex: Statistical tests for detecting differential distributions based on the 2\-Wasserstein distance :homepage: https://bioconductor.org/packages/3.18/bioc/html/waddR.html :license: MIT + file LICENSE :recipe: /`bioconductor-waddr `_/`meta.yaml `_ The package offers statistical tests based on the 2\-Wasserstein distance for detecting and characterizing differences between two distributions given in the form of samples. Functions for calculating the 2\-Wasserstein distance and testing for differential distributions are provided\, as well as a specifically tailored test for differential expression in single\-cell RNA sequencing data. .. conda:package:: bioconductor-waddr |downloads_bioconductor-waddr| |docker_bioconductor-waddr| :versions: .. raw:: html
1.16.0-01.14.0-01.12.0-11.12.0-01.8.0-21.8.0-11.8.0-01.6.1-01.4.0-1 ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.8.0-2``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-biocfilecache: ``>=2.10.0,<2.11.0`` :depends bioconductor-biocfilecache: ``>=2.10.1,<2.11.0a0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0a0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-arm: ``>=1.10-1`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-eva: :depends r-rcpp: ``>=1.0.1`` :depends r-rcpparmadillo: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-waddr and update with:: mamba update bioconductor-waddr To create a new environment, run:: mamba create --name myenvname bioconductor-waddr with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-waddr: (see `bioconductor-waddr/tags`_ for valid values for ````) .. |downloads_bioconductor-waddr| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-waddr.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-waddr :alt: (downloads) .. |docker_bioconductor-waddr| image:: https://quay.io/repository/biocontainers/bioconductor-waddr/status :target: https://quay.io/repository/biocontainers/bioconductor-waddr .. _`bioconductor-waddr/tags`: https://quay.io/repository/biocontainers/bioconductor-waddr?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-waddr/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-waddr/README.html