:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconvert' .. highlight: bash bioconvert ========== .. conda:recipe:: bioconvert :replaces_section_title: :noindex: convert various bioinformatics formats :homepage: http://bioconvert.readthedocs.io/ :license: GPL / GPL3 :recipe: /`bioconvert `_/`meta.yaml `_ .. conda:package:: bioconvert |downloads_bioconvert| |docker_bioconvert| :versions: .. raw:: html
0.5.2-00.4.3-00.4.2-00.4.1-00.4.0-00.3.0-10.2.0-20.2.0-10.0.10-1 ``0.5.2-0``,  ``0.4.3-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.0-1``,  ``0.2.0-2``,  ``0.2.0-1``,  ``0.0.10-1``,  ``0.0.10-0`` .. raw:: html
:depends bamtools: :depends bcftools: :depends bedops: :depends bedtools: :depends biopython: ``>=1.70`` :depends biosniff: :depends colorlog: :depends deeptools: :depends dsrc: :depends easydev: :depends go: ``1.10.3`` :depends jinja2: ``<3.1`` :depends mappy: :depends matplotlib-base: :depends mawk: :depends mosdepth: :depends networkx: :depends numpydoc: :depends pandas: :depends pbzip2: :depends pigz: :depends plink: :depends py2bit: :depends pybigwig: :depends pyexcel: :depends pyexcel-ods3: :depends pyexcel-xls: :depends pyexcel-xlsx: :depends pysam: :depends python: :depends pyyaml: :depends sambamba: :depends samtools: ``>=1.9`` :depends sed: :depends seqkit: :depends seqtk: :depends squizz: :depends sra-tools: :depends statsmodels: :depends tqdm: :depends ucsc-bedgraphtobigwig: :depends ucsc-bigwigtobedgraph: :depends ucsc-fatotwobit: :depends ucsc-twobittofa: :depends ucsc-wigtobigwig: :depends wiggletools: ``1.2.11`` :depends xlrd: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconvert and update with:: conda update bioconvert or use the docker container:: docker pull quay.io/biocontainers/bioconvert: (see `bioconvert/tags`_ for valid values for ````) .. |downloads_bioconvert| image:: https://img.shields.io/conda/dn/bioconda/bioconvert.svg?style=flat :target: https://anaconda.org/bioconda/bioconvert :alt: (downloads) .. |docker_bioconvert| image:: https://quay.io/repository/biocontainers/bioconvert/status :target: https://quay.io/repository/biocontainers/bioconvert .. _`bioconvert/tags`: https://quay.io/repository/biocontainers/bioconvert?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconvert/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconvert/README.html