:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioframe' .. highlight: bash bioframe ======== .. conda:recipe:: bioframe :replaces_section_title: :noindex: Pandas utilities for tab\-delimited and other genomic files :homepage: https://github.com/mirnylab/bioframe :documentation: https://bioframe.readthedocs.io/en/latest/ :license: MIT / MIT :recipe: /`bioframe `_/`meta.yaml `_ .. conda:package:: bioframe |downloads_bioframe| |docker_bioframe| :versions: .. raw:: html
0.6.3-00.6.2-00.6.1-00.6.0-00.5.1-00.5.0-00.4.1-00.4.0-00.3.3-0 ``0.6.3-0``,  ``0.6.2-0``,  ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.3-0``,  ``0.3.2-0``,  ``0.3.1-0``,  ``0.2.0-0``,  ``0.1.0-0``,  ``0.0.12-0`` .. raw:: html
:depends cytoolz: :depends matplotlib-base: :depends numpy: ``>=1.10`` :depends pairix: :depends pandas: ``>=1.3`` :depends pyfaidx: :depends pysam: :depends python: ``>=3.7`` :depends pyyaml: :depends requests: :depends six: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioframe and update with:: mamba update bioframe To create a new environment, run:: mamba create --name myenvname bioframe with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioframe: (see `bioframe/tags`_ for valid values for ````) .. |downloads_bioframe| image:: https://img.shields.io/conda/dn/bioconda/bioframe.svg?style=flat :target: https://anaconda.org/bioconda/bioframe :alt: (downloads) .. |docker_bioframe| image:: https://quay.io/repository/biocontainers/bioframe/status :target: https://quay.io/repository/biocontainers/bioframe .. _`bioframe/tags`: https://quay.io/repository/biocontainers/bioframe?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioframe/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioframe/README.html