:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'biophi' .. highlight: bash biophi ====== .. conda:recipe:: biophi :replaces_section_title: :noindex: BioPhi open\-source antibody design platform :homepage: https://github.com/Merck/BioPhi :license: MIT / MIT :recipe: /`biophi `_/`meta.yaml `_ .. conda:package:: biophi |downloads_biophi| |docker_biophi| :versions: .. raw:: html
1.0.9-21.0.9-11.0.9-01.0.8-11.0.8-01.0.7-01.0.6-01.0.5-01.0.4-1 ``1.0.9-2``,  ``1.0.9-1``,  ``1.0.9-0``,  ``1.0.8-1``,  ``1.0.8-0``,  ``1.0.7-0``,  ``1.0.6-0``,  ``1.0.5-0``,  ``1.0.4-1``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.1-0`` .. raw:: html
:depends abnumber: ``0.3.2`` :depends anarci: ``2020.04.23`` :depends celery: :depends click: ``>=7`` :depends flask: ``<3`` :depends hmmer: ``>=3.1`` :depends humanize: :depends python: ``>=3.8`` :depends redis-py: :depends requests: :depends sapiens: ``>=1.0.4`` :depends sqlalchemy: ``<2`` :depends tqdm: :depends werkzeug: ``<3`` :depends xlsxwriter: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install biophi and update with:: mamba update biophi To create a new environment, run:: mamba create --name myenvname biophi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/biophi: (see `biophi/tags`_ for valid values for ````) .. |downloads_biophi| image:: https://img.shields.io/conda/dn/bioconda/biophi.svg?style=flat :target: https://anaconda.org/bioconda/biophi :alt: (downloads) .. |docker_biophi| image:: https://quay.io/repository/biocontainers/biophi/status :target: https://quay.io/repository/biocontainers/biophi .. _`biophi/tags`: https://quay.io/repository/biocontainers/biophi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biophi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/biophi/README.html