:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'biotradis' .. highlight: bash biotradis ========= .. conda:recipe:: biotradis :replaces_section_title: :noindex: A set of tools to analyse the output from TraDIS analyses :homepage: https://github.com/sanger-pathogens/Bio-Tradis :license: GPL3 / GPL-3.0-only :recipe: /`biotradis `_/`meta.yaml `_ .. conda:package:: biotradis |downloads_biotradis| |docker_biotradis| :versions: .. raw:: html
1.4.5-51.4.5-41.4.5-31.4.5-21.4.5-11.4.5-01.4.1-01.4.1.dev-41.4.1.dev-3 ``1.4.5-5``,  ``1.4.5-4``,  ``1.4.5-3``,  ``1.4.5-2``,  ``1.4.5-1``,  ``1.4.5-0``,  ``1.4.1-0``,  ``1.4.1.dev-4``,  ``1.4.1.dev-3``,  ``1.4.1.dev-2``,  ``1.4.1.dev-1``,  ``1.4.1.dev-0`` .. raw:: html
:depends bioconductor-edger: :depends bwa: :depends htslib: :depends perl: :depends perl-app-cpanminus: :depends perl-bioperl: ``>=1.7.2`` :depends perl-exception-class: :depends perl-local-lib: :depends perl-moose: :depends perl-parallel-forkmanager: :depends perl-pathtools: :depends perl-scalar-util-numeric: :depends perl-text-csv: :depends r-base: :depends r-getopt: :depends r-mass: :depends samtools: :depends smalt: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install biotradis and update with:: mamba update biotradis To create a new environment, run:: mamba create --name myenvname biotradis with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/biotradis: (see `biotradis/tags`_ for valid values for ````) .. |downloads_biotradis| image:: https://img.shields.io/conda/dn/bioconda/biotradis.svg?style=flat :target: https://anaconda.org/bioconda/biotradis :alt: (downloads) .. |docker_biotradis| image:: https://quay.io/repository/biocontainers/biotradis/status :target: https://quay.io/repository/biocontainers/biotradis .. _`biotradis/tags`: https://quay.io/repository/biocontainers/biotradis?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/biotradis/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/biotradis/README.html