:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bis-snp' .. highlight: bash bis-snp ======= .. conda:recipe:: bis-snp :replaces_section_title: :noindex: Bisulfite\-seq\/NOMe\-seq SNPs \& cytosine methylation caller :homepage: http://people.csail.mit.edu/dnaase/bissnp2011/ :license: MIT :recipe: /`bis-snp `_/`meta.yaml `_ .. conda:package:: bis-snp |downloads_bis-snp| |docker_bis-snp| :versions: ``1.0.1-3``,  ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0``,  ``0.82.2-0`` :depends openjdk: ``>=8.0.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bis-snp and update with:: mamba update bis-snp To create a new environment, run:: mamba create --name myenvname bis-snp with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bis-snp: (see `bis-snp/tags`_ for valid values for ````) .. |downloads_bis-snp| image:: https://img.shields.io/conda/dn/bioconda/bis-snp.svg?style=flat :target: https://anaconda.org/bioconda/bis-snp :alt: (downloads) .. |docker_bis-snp| image:: https://quay.io/repository/biocontainers/bis-snp/status :target: https://quay.io/repository/biocontainers/bis-snp .. _`bis-snp/tags`: https://quay.io/repository/biocontainers/bis-snp?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bis-snp/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bis-snp/README.html