:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'blast' .. highlight: bash blast ===== .. conda:recipe:: blast :replaces_section_title: :noindex: BLAST\+ is a new suite of BLAST tools that utilizes the NCBI C\+\+ Toolkit. :homepage: http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs :license: Public Domain :recipe: /`blast `_/`meta.yaml `_ :links: biotools: :biotools:`blast`, doi: :doi:`10.1016/S0022-2836(05)80360-2`, usegalaxy-eu: :usegalaxy-eu:`ncbi_blastx_wrapper` .. conda:package:: blast |downloads_blast| |docker_blast| :versions: .. raw:: html
2.15.0-12.15.0-02.14.1-02.14.0-22.14.0-12.14.0-02.13.0-12.13.0-02.12.0-4 ``2.15.0-1``,  ``2.15.0-0``,  ``2.14.1-0``,  ``2.14.0-2``,  ``2.14.0-1``,  ``2.14.0-0``,  ``2.13.0-1``,  ``2.13.0-0``,  ``2.12.0-4``,  ``2.12.0-3``,  ``2.12.0-2``,  ``2.12.0-1``,  ``2.12.0-0``,  ``2.11.0-1``,  ``2.11.0-0``,  ``2.10.1-3``,  ``2.10.1-2``,  ``2.10.1-1``,  ``2.10.1-0``,  ``2.9.0-7``,  ``2.9.0-6``,  ``2.9.0-5``,  ``2.9.0-4``,  ``2.9.0-3``,  ``2.9.0-2``,  ``2.9.0-1``,  ``2.9.0-0``,  ``2.7.1-6``,  ``2.7.1-5``,  ``2.7.1-3``,  ``2.7.1-2``,  ``2.7.1-1``,  ``2.6.0-2``,  ``2.6.0-1``,  ``2.6.0-0``,  ``2.5.0-3``,  ``2.5.0-2``,  ``2.5.0-1``,  ``2.2.31-5``,  ``2.2.31-4``,  ``2.2.31-3``,  ``2.2.31-2``,  ``2.2.31-1``,  ``2.2.21-0`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends curl: :depends entrez-direct: :depends libgcc-ng: ``>=12`` :depends libsqlite: ``>=3.44.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends ncbi-vdb: ``>=3.0.8,<4.0a0`` :depends pcre: ``>=8.45,<9.0a0`` :depends perl: :depends perl-archive-tar: :depends perl-json: :depends perl-list-moreutils: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install blast and update with:: mamba update blast To create a new environment, run:: mamba create --name myenvname blast with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/blast: (see `blast/tags`_ for valid values for ````) .. |downloads_blast| image:: https://img.shields.io/conda/dn/bioconda/blast.svg?style=flat :target: https://anaconda.org/bioconda/blast :alt: (downloads) .. |docker_blast| image:: https://quay.io/repository/biocontainers/blast/status :target: https://quay.io/repository/biocontainers/blast .. _`blast/tags`: https://quay.io/repository/biocontainers/blast?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blast/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/blast/README.html