:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'blastalign' .. highlight: bash blastalign ========== .. conda:recipe:: blastalign :replaces_section_title: :noindex: BlastAlign uses NCBI Blast to align nucleotide sequences that have large indels or are otherwise difficult to align globally. :homepage: http://evolve.zoo.ox.ac.uk/Evolve/Blastalign.html :license: GNU GENERAL PUBLIC LICENSE :recipe: /`blastalign `_/`meta.yaml `_ .. conda:package:: blastalign |downloads_blastalign| |docker_blastalign| :versions: ``1.4-8``,  ``1.4-7``,  ``1.4-6``,  ``1.4-5``,  ``1.4-4``,  ``1.4-3``,  ``1.4-2``,  ``1.4-1``,  ``1.4-0`` :depends blast-legacy: :depends libgcc-ng: ``>=12`` :depends perl: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install blastalign and update with:: mamba update blastalign To create a new environment, run:: mamba create --name myenvname blastalign with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/blastalign: (see `blastalign/tags`_ for valid values for ````) .. |downloads_blastalign| image:: https://img.shields.io/conda/dn/bioconda/blastalign.svg?style=flat :target: https://anaconda.org/bioconda/blastalign :alt: (downloads) .. |docker_blastalign| image:: https://quay.io/repository/biocontainers/blastalign/status :target: https://quay.io/repository/biocontainers/blastalign .. _`blastalign/tags`: https://quay.io/repository/biocontainers/blastalign?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blastalign/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/blastalign/README.html