:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'braker' .. highlight: bash braker ====== .. conda:recipe:: braker :replaces_section_title: :noindex: BRAKER1\: Unsupervised RNA\-Seq\-based genome annotation with GeneMark\-ET and AUGUSTUS :homepage: http://bioinf.uni-greifswald.de/augustus/ :license: Artistic license :recipe: /`braker `_/`meta.yaml `_ .. conda:package:: braker |downloads_braker| |docker_braker| :versions: ``1.9-6``,  ``1.9-5``,  ``1.9-4``,  ``1.9-3``,  ``1.9-2``,  ``1.9-1`` :depends perl: ``>=5.32.1,<6.0a0 *_perl5`` :depends perl-app-cpanminus: :depends perl-parallel-forkmanager: :depends perl-pathtools: :depends perl-scalar-util-numeric: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install braker and update with:: mamba update braker To create a new environment, run:: mamba create --name myenvname braker with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/braker: (see `braker/tags`_ for valid values for ````) .. |downloads_braker| image:: https://img.shields.io/conda/dn/bioconda/braker.svg?style=flat :target: https://anaconda.org/bioconda/braker :alt: (downloads) .. |docker_braker| image:: https://quay.io/repository/biocontainers/braker/status :target: https://quay.io/repository/biocontainers/braker .. _`braker/tags`: https://quay.io/repository/biocontainers/braker?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/braker/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/braker/README.html