:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bumbershoot' .. highlight: bash bumbershoot =========== .. conda:recipe:: bumbershoot :replaces_section_title: :noindex: The Bumbershoot tool suite for analyzing shotgun proteomic data :homepage: https://proteowizard.sourceforge.net :license: Apache 2.0 :recipe: /`bumbershoot `_/`meta.yaml `_ .. conda:package:: bumbershoot |downloads_bumbershoot| |docker_bumbershoot| :versions: .. raw:: html
3_0_21142_0e4f4a4-03_0_20295_bfe5db0-03_0_20290_13f6ea4-03_0_20178_35b8bd1-03_0_20175_cbf82d0-03_0_20163_6147e44-03_0_11579-03_0_11392-03_0_11391-0 ``3_0_21142_0e4f4a4-0``,  ``3_0_20295_bfe5db0-0``,  ``3_0_20290_13f6ea4-0``,  ``3_0_20178_35b8bd1-0``,  ``3_0_20175_cbf82d0-0``,  ``3_0_20163_6147e44-0``,  ``3_0_11579-0``,  ``3_0_11392-0``,  ``3_0_11391-0``,  ``3_0_11369-0``,  ``3_0_10246-0``,  ``3_0_10158-0`` .. raw:: html
:depends libgcc-ng: ``>=9.3.0`` :depends libstdcxx-ng: ``>=9.3.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bumbershoot and update with:: mamba update bumbershoot To create a new environment, run:: mamba create --name myenvname bumbershoot with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bumbershoot: (see `bumbershoot/tags`_ for valid values for ````) .. |downloads_bumbershoot| image:: https://img.shields.io/conda/dn/bioconda/bumbershoot.svg?style=flat :target: https://anaconda.org/bioconda/bumbershoot :alt: (downloads) .. |docker_bumbershoot| image:: https://quay.io/repository/biocontainers/bumbershoot/status :target: https://quay.io/repository/biocontainers/bumbershoot .. _`bumbershoot/tags`: https://quay.io/repository/biocontainers/bumbershoot?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bumbershoot/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bumbershoot/README.html