:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bustools' .. highlight: bash bustools ======== .. conda:recipe:: bustools :replaces_section_title: :noindex: bustools is a program for manipulating BUS files for single cell RNA\-Seq datasets. :homepage: https://github.com/BUStools/bustools :license: BSD / BSD-2-Clause "Simplified" License :recipe: /`bustools `_/`meta.yaml `_ .. conda:package:: bustools |downloads_bustools| |docker_bustools| :versions: .. raw:: html
0.43.2-00.43.1-00.43.0-00.42.0-20.42.0-10.42.0-00.41.0-20.41.0-10.41.0-0 ``0.43.2-0``,  ``0.43.1-0``,  ``0.43.0-0``,  ``0.42.0-2``,  ``0.42.0-1``,  ``0.42.0-0``,  ``0.41.0-2``,  ``0.41.0-1``,  ``0.41.0-0``,  ``0.40.0-1``,  ``0.40.0-0``,  ``0.39.4-0``,  ``0.39.3-0``,  ``0.39.2-0`` .. raw:: html
:depends hdf5: ``>=1.12.2,<1.12.3.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bustools and update with:: mamba update bustools To create a new environment, run:: mamba create --name myenvname bustools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bustools: (see `bustools/tags`_ for valid values for ````) .. |downloads_bustools| image:: https://img.shields.io/conda/dn/bioconda/bustools.svg?style=flat :target: https://anaconda.org/bioconda/bustools :alt: (downloads) .. |docker_bustools| image:: https://quay.io/repository/biocontainers/bustools/status :target: https://quay.io/repository/biocontainers/bustools .. _`bustools/tags`: https://quay.io/repository/biocontainers/bustools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bustools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bustools/README.html