:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cami-opal' .. highlight: bash cami-opal ========= .. conda:recipe:: cami-opal :replaces_section_title: :noindex: OPAL assesses and compares the performance of taxonomic metagenome profilers. :homepage: http://cami-challenge.org :developer docs: https://github.com/CAMI-challenge/OPAL :license: Apache-2.0 :recipe: /`cami-opal `_/`meta.yaml `_ .. conda:package:: cami-opal |downloads_cami-opal| |docker_cami-opal| :versions: .. raw:: html
1.0.12-01.0.11-01.0.10-01.0.9-11.0.9-01.0.8.post0-01.0.5-21.0.5-01.0.2-1 ``1.0.12-0``,  ``1.0.11-0``,  ``1.0.10-0``,  ``1.0.9-1``,  ``1.0.9-0``,  ``1.0.8.post0-0``,  ``1.0.5-2``,  ``1.0.5-0``,  ``1.0.2-1``,  ``1.0.2-0`` .. raw:: html
:depends bokeh: ``3.1.0`` :depends dendropy: ``>=4.4.0`` :depends docker-py: ``>=6.1.2`` :depends h5py: ``>=2.9.0`` :depends jinja2: ``<3.0.1`` :depends markupsafe: ``<2.1`` :depends matplotlib-base: ``>=3.7.1`` :depends numpy: ``>=1.24.2`` :depends pandas: ``>=1.5.3`` :depends python: ``>=3.6`` :depends scikit-bio: ``>=0.5.5`` :depends scipy: ``>=1.10.1`` :depends seaborn: ``>=0.12.2`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cami-opal and update with:: mamba update cami-opal To create a new environment, run:: mamba create --name myenvname cami-opal with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cami-opal: (see `cami-opal/tags`_ for valid values for ````) .. |downloads_cami-opal| image:: https://img.shields.io/conda/dn/bioconda/cami-opal.svg?style=flat :target: https://anaconda.org/bioconda/cami-opal :alt: (downloads) .. |docker_cami-opal| image:: https://quay.io/repository/biocontainers/cami-opal/status :target: https://quay.io/repository/biocontainers/cami-opal .. _`cami-opal/tags`: https://quay.io/repository/biocontainers/cami-opal?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cami-opal/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cami-opal/README.html