:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'cancerit-allelecount'
.. highlight: bash

cancerit-allelecount
====================

.. conda:recipe:: cancerit-allelecount
   :replaces_section_title:
   :noindex:

   Support code for NGS copy number algorithms

   :homepage: https://github.com/cancerit/alleleCount
   :license: GPLv3
   :recipe: /`cancerit-allelecount <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cancerit-allelecount>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cancerit-allelecount/meta.yaml>`_

   


.. conda:package:: cancerit-allelecount

   |downloads_cancerit-allelecount| |docker_cancerit-allelecount|

   :versions:
      
      

      ``4.2.1-0``,  ``4.2.0-0``,  ``4.0.2-2``,  ``4.0.2-1``,  ``2.1.2-3``,  ``2.1.2-2``,  ``2.1.2-1``,  ``2.1.2-0``

      

   
   :depends bzip2: ``>=1.0.8,<2.0a0``
   :depends htslib: ``>=1.10.2,<1.11.0a0``
   :depends libdeflate: ``>=1.6,<1.7.0a0``
   :depends libgcc-ng: ``>=7.5.0``
   :depends xz: ``>=5.2.5,<5.3.0a0``
   :depends zlib: ``>=1.2.11,<1.3.0a0``
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install cancerit-allelecount

   and update with::

      conda update cancerit-allelecount

   or use the docker container::

      docker pull quay.io/biocontainers/cancerit-allelecount:<tag>

   (see `cancerit-allelecount/tags`_ for valid values for ``<tag>``)


.. |downloads_cancerit-allelecount| image:: https://img.shields.io/conda/dn/bioconda/cancerit-allelecount.svg?style=flat
   :target: https://anaconda.org/bioconda/cancerit-allelecount
   :alt:   (downloads)
.. |docker_cancerit-allelecount| image:: https://quay.io/repository/biocontainers/cancerit-allelecount/status
   :target: https://quay.io/repository/biocontainers/cancerit-allelecount
.. _`cancerit-allelecount/tags`: https://quay.io/repository/biocontainers/cancerit-allelecount?tab=tags







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