:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cancerit-allelecount' .. highlight: bash cancerit-allelecount ==================== .. conda:recipe:: cancerit-allelecount :replaces_section_title: :noindex: Support code for NGS copy number algorithms :homepage: https://github.com/cancerit/alleleCount :license: GPLv3 :recipe: /`cancerit-allelecount `_/`meta.yaml `_ .. conda:package:: cancerit-allelecount |downloads_cancerit-allelecount| |docker_cancerit-allelecount| :versions: ``4.2.1-0``,  ``4.2.0-0``,  ``4.0.2-2``,  ``4.0.2-1``,  ``2.1.2-3``,  ``2.1.2-2``,  ``2.1.2-1``,  ``2.1.2-0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends htslib: ``>=1.10.2,<1.11.0a0`` :depends libdeflate: ``>=1.6,<1.7.0a0`` :depends libgcc-ng: ``>=7.5.0`` :depends xz: ``>=5.2.5,<5.3.0a0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install cancerit-allelecount and update with:: conda update cancerit-allelecount or use the docker container:: docker pull quay.io/biocontainers/cancerit-allelecount: (see `cancerit-allelecount/tags`_ for valid values for ````) .. |downloads_cancerit-allelecount| image:: https://img.shields.io/conda/dn/bioconda/cancerit-allelecount.svg?style=flat :target: https://anaconda.org/bioconda/cancerit-allelecount :alt: (downloads) .. |docker_cancerit-allelecount| image:: https://quay.io/repository/biocontainers/cancerit-allelecount/status :target: https://quay.io/repository/biocontainers/cancerit-allelecount .. _`cancerit-allelecount/tags`: https://quay.io/repository/biocontainers/cancerit-allelecount?tab=tags Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cancerit-allelecount/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cancerit-allelecount/README.html