:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'ccat'
.. highlight: bash

ccat
====

.. conda:recipe:: ccat
   :replaces_section_title:
   :noindex:

   CCAT is a software package for the analysis of ChIP\-seq data with negative control.

   :homepage: http://cmb.gis.a-star.edu.sg/ChIPSeq/paperCCAT.htm
   :license: unknown
   :recipe: /`ccat <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ccat>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ccat/meta.yaml>`_
   :links: biotools: :biotools:`CCAT`, doi: :doi:`10.1093/bioinformatics/btq128`, usegalaxy-eu: :usegalaxy-eu:`peakcalling_ccat`

   


.. conda:package:: ccat

   |downloads_ccat| |docker_ccat|

   :versions:
      
      

      ``3.0-5``,  ``3.0-4``,  ``3.0-3``,  ``3.0-2``,  ``3.0-1``,  ``3.0-0``

      

   
   :depends libgcc-ng: ``>=10.3.0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install ccat

   and update with::

      mamba update ccat

  To create a new environment, run::

      mamba create --name myenvname ccat

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/ccat:<tag>

   (see `ccat/tags`_ for valid values for ``<tag>``)


.. |downloads_ccat| image:: https://img.shields.io/conda/dn/bioconda/ccat.svg?style=flat
   :target: https://anaconda.org/bioconda/ccat
   :alt:   (downloads)
.. |docker_ccat| image:: https://quay.io/repository/biocontainers/ccat/status
   :target: https://quay.io/repository/biocontainers/ccat
.. _`ccat/tags`: https://quay.io/repository/biocontainers/ccat?tab=tags


.. raw:: html

    <script>
        var package = "ccat";
        var versions = ["3.0","3.0","3.0","3.0","3.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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