:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cgatcore' .. highlight: bash cgatcore ======== .. conda:recipe:: cgatcore :replaces_section_title: :noindex: CGAT \: the Computational Genomics Analysis Toolkit :homepage: https://github.com/cgat-developers/cgat-core :license: MIT / MIT :recipe: /`cgatcore `_/`meta.yaml `_ .. conda:package:: cgatcore |downloads_cgatcore| |docker_cgatcore| :versions: .. raw:: html
0.6.15-00.6.14-00.6.11-00.6.10-00.6.9-00.6.7-00.6.5-10.6.5-00.6.4-0 ``0.6.15-0``,  ``0.6.14-0``,  ``0.6.11-0``,  ``0.6.10-0``,  ``0.6.9-0``,  ``0.6.7-0``,  ``0.6.5-1``,  ``0.6.5-0``,  ``0.6.4-0``,  ``0.6.3-1``,  ``0.6.3-0``,  ``0.6.1-1``,  ``0.6.1-0``,  ``0.5.15-1``,  ``0.5.15-0``,  ``0.5.14-0``,  ``0.5.13-0``,  ``0.5.12-1``,  ``0.5.11-0``,  ``0.5.10-0``,  ``0.5.6-0``,  ``0.5.4-0``,  ``0.5.2-0``,  ``0.5.1-0`` .. raw:: html
:depends apsw: :depends boto3: :depends coreutils: :depends drmaa: :depends ftputil: :depends gevent: :depends google-cloud-sdk: :depends google-cloud-storage: :depends nomkl: :depends pandas: :depends pysftp: :depends python: ``>=3`` :depends pyyaml: ``>=5.1`` :depends ruffus: :depends six: :depends sqlalchemy: :depends time: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cgatcore and update with:: mamba update cgatcore To create a new environment, run:: mamba create --name myenvname cgatcore with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cgatcore: (see `cgatcore/tags`_ for valid values for ````) .. |downloads_cgatcore| image:: https://img.shields.io/conda/dn/bioconda/cgatcore.svg?style=flat :target: https://anaconda.org/bioconda/cgatcore :alt: (downloads) .. |docker_cgatcore| image:: https://quay.io/repository/biocontainers/cgatcore/status :target: https://quay.io/repository/biocontainers/cgatcore .. _`cgatcore/tags`: https://quay.io/repository/biocontainers/cgatcore?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cgatcore/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cgatcore/README.html