:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'chicagotools'
.. highlight: bash

chicagotools
============

.. conda:recipe:: chicagotools
   :replaces_section_title:
   :noindex:

   chicagoTools are an assorted set of scripts associated with the Chicago R package.

   :homepage: https://bitbucket.org/chicagoTeam/chicago/src/c95eda46cb72e30e25ece06780e517efb3c06cc2/chicagoTools/?at=master
   :license: artistic license 2.0
   :recipe: /`chicagotools <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/chicagotools>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/chicagotools/meta.yaml>`_

   


.. conda:package:: chicagotools

   |downloads_chicagotools| |docker_chicagotools|

   :versions:
      
      

      ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``

      

   
   :depends bioconductor-chicago: 
   :depends python: 
   :depends r-argparser: 
   :depends r-base: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install chicagotools

   and update with::

      mamba update chicagotools

  To create a new environment, run::

      mamba create --name myenvname chicagotools

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/chicagotools:<tag>

   (see `chicagotools/tags`_ for valid values for ``<tag>``)


.. |downloads_chicagotools| image:: https://img.shields.io/conda/dn/bioconda/chicagotools.svg?style=flat
   :target: https://anaconda.org/bioconda/chicagotools
   :alt:   (downloads)
.. |docker_chicagotools| image:: https://quay.io/repository/biocontainers/chicagotools/status
   :target: https://quay.io/repository/biocontainers/chicagotools
.. _`chicagotools/tags`: https://quay.io/repository/biocontainers/chicagotools?tab=tags


.. raw:: html

    <script>
        var package = "chicagotools";
        var versions = ["1.2.0","1.2.0","1.2.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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