:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'chorus2' .. highlight: bash chorus2 ======= .. conda:recipe:: chorus2 :replaces_section_title: :noindex: A pipeline to select oligonucleotides for fluorescence in situ hbridization \(Oligo\-FISH\). :homepage: https://github.com/zhangtaolab/Chorus2 :documentation: https://chorus2.readthedocs.io/en/dev/ :license: MIT license :recipe: /`chorus2 `_/`meta.yaml `_ :links: biotools: :biotools:`chorus2` .. conda:package:: chorus2 |downloads_chorus2| |docker_chorus2| :versions: ``2.01-0``,  ``2.0.1-0``,  ``2.0-5``,  ``2.0-4``,  ``2.0-3``,  ``2.0-2``,  ``2.0-1``,  ``2.0-0`` :depends bcftools: :depends bwa: ``<=0.7.8`` :depends bwa: ``>=0.7.3a`` :depends kmer-jellyfish: ``2.*`` :depends libgcc-ng: ``>=7.5.0`` :depends matplotlib-base: ``>=3`` :depends numpy: :depends pandas: :depends primer3-py: ``>=0.4.2`` :depends pybedtools: :depends pybigwig: :depends pyfasta: :depends pyqt: ``<5.11`` :depends python: ``>=3.6,<3.7.0a0`` :depends python_abi: ``3.6.* *_cp36m`` :depends samtools: :depends sip: ``>=4`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install chorus2 and update with:: conda update chorus2 or use the docker container:: docker pull quay.io/biocontainers/chorus2: (see `chorus2/tags`_ for valid values for ````) .. |downloads_chorus2| image:: https://img.shields.io/conda/dn/bioconda/chorus2.svg?style=flat :target: https://anaconda.org/bioconda/chorus2 :alt: (downloads) .. |docker_chorus2| image:: https://quay.io/repository/biocontainers/chorus2/status :target: https://quay.io/repository/biocontainers/chorus2 .. _`chorus2/tags`: https://quay.io/repository/biocontainers/chorus2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/chorus2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/chorus2/README.html