:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'chromosight' .. highlight: bash chromosight =========== .. conda:recipe:: chromosight :replaces_section_title: :noindex: Detect loops \(and other patterns\) in Hi\-C contact maps. :homepage: https://github.com/koszullab/chromosight :license: OTHER / Artistic :recipe: /`chromosight `_/`meta.yaml `_ .. conda:package:: chromosight |downloads_chromosight| |docker_chromosight| :versions: .. raw:: html
1.6.3-01.6.2-01.6.1-01.6.0-01.5.1-01.5.0-01.4.1-01.3.3-01.3.1-0 ``1.6.3-0``,  ``1.6.2-0``,  ``1.6.1-0``,  ``1.6.0-0``,  ``1.5.1-0``,  ``1.5.0-0``,  ``1.4.1-0``,  ``1.3.3-0``,  ``1.3.1-0``,  ``1.2.1-0``,  ``1.2.0-0``,  ``1.1.4-0``,  ``1.1.3-0``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.0-0``,  ``0.9.9-0``,  ``0.9.8-0``,  ``0.9.7-0``,  ``0.9.5-0``,  ``0.9.3-0``,  ``0.9.2-0``,  ``0.9.1-0``,  ``0.9.0-0``,  ``0.8.2-0``,  ``0.8.0-0``,  ``0.7.3-0``,  ``0.7.2-0``,  ``0.7.1-0``,  ``0.7.0-0``,  ``0.6.0-0``,  ``0.5.2-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.0-0``,  ``0.3.1-0``,  ``0.3.0-0`` .. raw:: html
:depends cooler: :depends docopt: :depends jsonschema: :depends matplotlib-base: :depends numpy: :depends python: ``>=3.6`` :depends scikit-learn: :depends scipy: ``>=1.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install chromosight and update with:: mamba update chromosight To create a new environment, run:: mamba create --name myenvname chromosight with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/chromosight: (see `chromosight/tags`_ for valid values for ````) .. |downloads_chromosight| image:: https://img.shields.io/conda/dn/bioconda/chromosight.svg?style=flat :target: https://anaconda.org/bioconda/chromosight :alt: (downloads) .. |docker_chromosight| image:: https://quay.io/repository/biocontainers/chromosight/status :target: https://quay.io/repository/biocontainers/chromosight .. _`chromosight/tags`: https://quay.io/repository/biocontainers/chromosight?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/chromosight/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/chromosight/README.html