:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'circexplorer' .. highlight: bash circexplorer ============ .. conda:recipe:: circexplorer :replaces_section_title: :noindex: A combined strategy to identify circular RNAs \(circRNAs and ciRNAs\) :homepage: https://github.com/YangLab/CIRCexplorer :license: MIT :recipe: /`circexplorer `_/`meta.yaml `_ .. conda:package:: circexplorer |downloads_circexplorer| |docker_circexplorer| :versions: ``1.1.10-4``,  ``1.1.10-3``,  ``1.1.10-2``,  ``1.1.10-0``,  ``1.1.9-0``,  ``0.1-1``,  ``0.1-0`` :depends docopt: :depends pysam: ``>=0.8.4`` :depends python: ``<3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install circexplorer and update with:: mamba update circexplorer To create a new environment, run:: mamba create --name myenvname circexplorer with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/circexplorer: (see `circexplorer/tags`_ for valid values for ````) .. |downloads_circexplorer| image:: https://img.shields.io/conda/dn/bioconda/circexplorer.svg?style=flat :target: https://anaconda.org/bioconda/circexplorer :alt: (downloads) .. |docker_circexplorer| image:: https://quay.io/repository/biocontainers/circexplorer/status :target: https://quay.io/repository/biocontainers/circexplorer .. _`circexplorer/tags`: https://quay.io/repository/biocontainers/circexplorer?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/circexplorer/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/circexplorer/README.html