:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'clipkit' .. highlight: bash clipkit ======= .. conda:recipe:: clipkit :replaces_section_title: :noindex: Alignment trimming software for phylogenetics. :homepage: https://github.com/jlsteenwyk/clipkit :documentation: https://jlsteenwyk.com/ClipKIT/ :license: MIT / MIT :recipe: /`clipkit `_/`meta.yaml `_ :links: doi: :doi:`10.1371/journal.pbio.3001007` .. conda:package:: clipkit |downloads_clipkit| |docker_clipkit| :versions: .. raw:: html
2.2.4-02.2.2-02.2.0-02.1.3-02.1.2-02.1.1-02.1.0-02.0.1-01.4.1-0 ``2.2.4-0``,  ``2.2.2-0``,  ``2.2.0-0``,  ``2.1.3-0``,  ``2.1.2-0``,  ``2.1.1-0``,  ``2.1.0-0``,  ``2.0.1-0``,  ``1.4.1-0``,  ``1.3.0-0``,  ``1.2.0-0``,  ``1.1.6-0``,  ``1.1.5-0``,  ``1.1.3-0``,  ``1.1.1-0``,  ``1.1.0-0``,  ``1.0.7-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``0.2.0-0``,  ``0.1.9-0``,  ``0.1.3-0``,  ``0.1.2-0`` .. raw:: html
:depends biopython: ``>=1.81`` :depends numpy: ``>=1.24.0`` :depends python: ``>=3.9`` :depends tqdm: ``>=4.45.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install clipkit and update with:: mamba update clipkit To create a new environment, run:: mamba create --name myenvname clipkit with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/clipkit: (see `clipkit/tags`_ for valid values for ````) .. |downloads_clipkit| image:: https://img.shields.io/conda/dn/bioconda/clipkit.svg?style=flat :target: https://anaconda.org/bioconda/clipkit :alt: (downloads) .. |docker_clipkit| image:: https://quay.io/repository/biocontainers/clipkit/status :target: https://quay.io/repository/biocontainers/clipkit .. _`clipkit/tags`: https://quay.io/repository/biocontainers/clipkit?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/clipkit/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/clipkit/README.html