:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cluster_vcf_records' .. highlight: bash cluster_vcf_records =================== .. conda:recipe:: cluster_vcf_records :replaces_section_title: :noindex: Package to cluster VCF records. For use by gramtools and minos :homepage: https://github.com/iqbal-lab-org/cluster_vcf_records :license: MIT / MIT :recipe: /`cluster_vcf_records `_/`meta.yaml `_ .. conda:package:: cluster_vcf_records |downloads_cluster_vcf_records| |docker_cluster_vcf_records| :versions: ``0.13.3-0``,  ``0.13.2-0``,  ``0.13.1-0``,  ``0.13.0-0``,  ``0.12.4-1``,  ``0.12.4-0`` :depends bitarray: :depends pyfastaq: ``>=3.14.0`` :depends pysam: :depends python: ``>=3.6`` :depends vcflib: :depends vt: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cluster_vcf_records and update with:: mamba update cluster_vcf_records To create a new environment, run:: mamba create --name myenvname cluster_vcf_records with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cluster_vcf_records: (see `cluster_vcf_records/tags`_ for valid values for ````) .. |downloads_cluster_vcf_records| image:: https://img.shields.io/conda/dn/bioconda/cluster_vcf_records.svg?style=flat :target: https://anaconda.org/bioconda/cluster_vcf_records :alt: (downloads) .. |docker_cluster_vcf_records| image:: https://quay.io/repository/biocontainers/cluster_vcf_records/status :target: https://quay.io/repository/biocontainers/cluster_vcf_records .. _`cluster_vcf_records/tags`: https://quay.io/repository/biocontainers/cluster_vcf_records?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cluster_vcf_records/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cluster_vcf_records/README.html