:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cocoscore' .. highlight: bash cocoscore ========= .. conda:recipe:: cocoscore :replaces_section_title: :noindex: CoCoScore\: context\-aware co\-occurrence scores for biomedical text mining applications :homepage: https://github.com/JungeAlexander/cocoscore :license: MIT / MIT :recipe: /`cocoscore `_/`meta.yaml `_ .. conda:package:: cocoscore |downloads_cocoscore| |docker_cocoscore| :versions: ``1.0.0-0``,  ``0.2.0-0`` :depends fasttext: ``0.1.0`` :depends gensim: ``>=3.4.0`` :depends pandas: ``>=0.23.0`` :depends python: ``>=3`` :depends scikit-learn: ``>=0.19.1`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cocoscore and update with:: mamba update cocoscore To create a new environment, run:: mamba create --name myenvname cocoscore with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cocoscore: (see `cocoscore/tags`_ for valid values for ````) .. |downloads_cocoscore| image:: https://img.shields.io/conda/dn/bioconda/cocoscore.svg?style=flat :target: https://anaconda.org/bioconda/cocoscore :alt: (downloads) .. |docker_cocoscore| image:: https://quay.io/repository/biocontainers/cocoscore/status :target: https://quay.io/repository/biocontainers/cocoscore .. _`cocoscore/tags`: https://quay.io/repository/biocontainers/cocoscore?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cocoscore/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cocoscore/README.html