:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cooltools' .. highlight: bash cooltools ========= .. conda:recipe:: cooltools :replaces_section_title: :noindex: Analysis tools for genomic interaction data stored in .cool format :homepage: https://github.com/open2c/cooltools :documentation: https://cooltools.readthedocs.io :license: MIT / MIT :recipe: /`cooltools `_/`meta.yaml `_ .. conda:package:: cooltools |downloads_cooltools| |docker_cooltools| :versions: .. raw:: html
0.6.1-00.6.0-00.5.4-20.5.4-10.5.4-00.5.3-00.5.2-30.5.2-20.5.2-1 ``0.6.1-0``,  ``0.6.0-0``,  ``0.5.4-2``,  ``0.5.4-1``,  ``0.5.4-0``,  ``0.5.3-0``,  ``0.5.2-3``,  ``0.5.2-2``,  ``0.5.2-1``,  ``0.5.2-0``,  ``0.5.1-1``,  ``0.5.1-0``,  ``0.5.0-1``,  ``0.5.0-0``,  ``0.4.0-0``,  ``0.3.2-3``,  ``0.3.2-2``,  ``0.3.2-1``,  ``0.3.2-0`` .. raw:: html
:depends bioframe: ``>=0.4.1`` :depends click: ``>=7`` :depends cooler: ``>=0.9.1`` :depends joblib: :depends libgcc-ng: ``>=12`` :depends matplotlib-base: :depends numba: :depends numpy: ``<1.24`` :depends numpy: ``>=1.23.5,<2.0a0`` :depends pandas: ``>=1.5.1,<2`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends scikit-image: :depends scikit-learn: ``>=1.1.2`` :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cooltools and update with:: mamba update cooltools To create a new environment, run:: mamba create --name myenvname cooltools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cooltools: (see `cooltools/tags`_ for valid values for ````) .. |downloads_cooltools| image:: https://img.shields.io/conda/dn/bioconda/cooltools.svg?style=flat :target: https://anaconda.org/bioconda/cooltools :alt: (downloads) .. |docker_cooltools| image:: https://quay.io/repository/biocontainers/cooltools/status :target: https://quay.io/repository/biocontainers/cooltools .. _`cooltools/tags`: https://quay.io/repository/biocontainers/cooltools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cooltools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cooltools/README.html