:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cpat' .. highlight: bash cpat ==== .. conda:recipe:: cpat :replaces_section_title: :noindex: Coding Potential Assessment Tool :homepage: https://cpat.readthedocs.io/en/latest/ :license: GPL-2.0-or-later :recipe: /`cpat `_/`meta.yaml `_ .. conda:package:: cpat |downloads_cpat| |docker_cpat| :versions: .. raw:: html
3.0.5-03.0.4-23.0.4-13.0.4-02.0.0-42.0.0-32.0.0-22.0.0-12.0.0-0 ``3.0.5-0``,  ``3.0.4-2``,  ``3.0.4-1``,  ``3.0.4-0``,  ``2.0.0-4``,  ``2.0.0-3``,  ``2.0.0-2``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.2.4-1``,  ``1.2.4-0``,  ``1.2.3-1``,  ``1.2.3-0``,  ``1.2.2-2`` .. raw:: html
:depends bx-python: :depends libgcc-ng: ``>=12`` :depends numpy: ``>=1.21.6,<2.0a0`` :depends pysam: ``>=0.22.0,<0.23.0a0`` :depends python: ``>=3.8,<3.9.0a0`` :depends python_abi: ``3.8.* *_cp38`` :depends r-base: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cpat and update with:: mamba update cpat To create a new environment, run:: mamba create --name myenvname cpat with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cpat: (see `cpat/tags`_ for valid values for ````) .. |downloads_cpat| image:: https://img.shields.io/conda/dn/bioconda/cpat.svg?style=flat :target: https://anaconda.org/bioconda/cpat :alt: (downloads) .. |docker_cpat| image:: https://quay.io/repository/biocontainers/cpat/status :target: https://quay.io/repository/biocontainers/cpat .. _`cpat/tags`: https://quay.io/repository/biocontainers/cpat?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cpat/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cpat/README.html