:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'crispector' .. highlight: bash crispector ========== .. conda:recipe:: crispector :replaces_section_title: :noindex: Accurate estimation of off\-target editing activity from comparative NGS data :homepage: https://github.com/YakhiniGroup/crispector :license: free to academic and non-for-profit research work, non-commercial use, see LICENSE file :recipe: /`crispector `_/`meta.yaml `_ .. conda:package:: crispector |downloads_crispector| |docker_crispector| :versions: ``1.0.7-0``,  ``1.0.4-0``,  ``1.0.3-0``,  ``1.0.2b9-0``,  ``1.0.2b7-0``,  ``1.0.2b6-0`` :depends biopython: ``>=1.74`` :depends click: ``>=7.0`` :depends fastp: :depends jinja2: :depends matplotlib-base: ``>=3.1.2`` :depends mpmath: ``>=1.3.0`` :depends numpy: ``>=1.12.1`` :depends pandas: ``>=0.24.2`` :depends plotly: ``>=4.3.0`` :depends python: ``3.7.*`` :depends python-edlib: :depends pyyaml: ``>=5.1.2`` :depends scipy: ``>=1.2.1`` :depends seaborn: ``>=0.9.0`` :depends statsmodels: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install crispector and update with:: mamba update crispector To create a new environment, run:: mamba create --name myenvname crispector with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/crispector: (see `crispector/tags`_ for valid values for ````) .. |downloads_crispector| image:: https://img.shields.io/conda/dn/bioconda/crispector.svg?style=flat :target: https://anaconda.org/bioconda/crispector :alt: (downloads) .. |docker_crispector| image:: https://quay.io/repository/biocontainers/crispector/status :target: https://quay.io/repository/biocontainers/crispector .. _`crispector/tags`: https://quay.io/repository/biocontainers/crispector?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crispector/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/crispector/README.html