:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'crispresso2' .. highlight: bash crispresso2 =========== .. conda:recipe:: crispresso2 :replaces_section_title: :noindex: A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments :homepage: https://github.com/pinellolab/CRISPResso2 :license: Partners :recipe: /`crispresso2 `_/`meta.yaml `_ .. conda:package:: crispresso2 |downloads_crispresso2| |docker_crispresso2| :versions: .. raw:: html
2.2.14-02.2.13-02.2.12-12.2.12-02.2.11-02.2.10-22.2.10-12.2.10-02.2.9-1 ``2.2.14-0``,  ``2.2.13-0``,  ``2.2.12-1``,  ``2.2.12-0``,  ``2.2.11-0``,  ``2.2.10-2``,  ``2.2.10-1``,  ``2.2.10-0``,  ``2.2.9-1``,  ``2.2.9-0``,  ``2.2.8-0``,  ``2.2.7-1``,  ``2.2.7-0``,  ``2.2.6-1``,  ``2.2.6-0``,  ``2.2.5-0``,  ``2.2.4-0``,  ``2.2.3-0``,  ``2.2.2-0``,  ``2.2.0-0``,  ``2.1.3-0``,  ``2.1.2-0``,  ``2.1.1-0``,  ``2.1.0-1``,  ``2.1.0-0``,  ``2.0.45-1``,  ``2.0.45-0``,  ``2.0.44-0``,  ``2.0.43-0``,  ``2.0.42-0``,  ``2.0.40-0``,  ``2.0.39-0``,  ``2.0.38-0``,  ``2.0.32-0``,  ``2.0.31-0``,  ``2.0.30-0``,  ``2.0.29-0``,  ``2.0.28-0``,  ``2.0.27-3``,  ``2.0.23-1``,  ``2.0.23-0`` .. raw:: html
:depends bowtie2: :depends flash: :depends jinja2: :depends libgcc-ng: ``>=12`` :depends matplotlib-base: :depends numpy: ``>=1.21.6,<2.0a0`` :depends pandas: :depends plotly: :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends samtools: :depends scipy: :depends seaborn-base: :depends trimmomatic: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install crispresso2 and update with:: mamba update crispresso2 To create a new environment, run:: mamba create --name myenvname crispresso2 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/crispresso2: (see `crispresso2/tags`_ for valid values for ````) .. |downloads_crispresso2| image:: https://img.shields.io/conda/dn/bioconda/crispresso2.svg?style=flat :target: https://anaconda.org/bioconda/crispresso2 :alt: (downloads) .. |docker_crispresso2| image:: https://quay.io/repository/biocontainers/crispresso2/status :target: https://quay.io/repository/biocontainers/crispresso2 .. _`crispresso2/tags`: https://quay.io/repository/biocontainers/crispresso2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crispresso2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/crispresso2/README.html