:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cyvcf2' .. highlight: bash cyvcf2 ====== .. conda:recipe:: cyvcf2 :replaces_section_title: :noindex: A cython wrapper around htslib built for fast parsing of Variant Call Format \(VCF\) files :homepage: https://github.com/brentp/cyvcf2 :license: MIT :recipe: /`cyvcf2 `_/`meta.yaml `_ .. conda:package:: cyvcf2 |downloads_cyvcf2| |docker_cyvcf2| :versions: .. raw:: html
0.30.15-00.30.14-10.30.14-00.30.13-00.30.12-00.30.11-20.30.11-10.30.11-00.30.9-0 ``0.30.15-0``,  ``0.30.14-1``,  ``0.30.14-0``,  ``0.30.13-0``,  ``0.30.12-0``,  ``0.30.11-2``,  ``0.30.11-1``,  ``0.30.11-0``,  ``0.30.9-0``,  ``0.30.8-0``,  ``0.30.6-1``,  ``0.30.6-0``,  ``0.30.4-0``,  ``0.30.2-0``,  ``0.30.1-0``,  ``0.20.9-0``,  ``0.20.8-0``,  ``0.20.7-0``,  ``0.20.6-0``,  ``0.20.5-0``,  ``0.20.4-1``,  ``0.20.4-0``,  ``0.20.3-0``,  ``0.20.1-1``,  ``0.20.1-0``,  ``0.20.0-1``,  ``0.20.0-0``,  ``0.11.7-0``,  ``0.11.6-0``,  ``0.11.5-1``,  ``0.11.5-0``,  ``0.11.4-0``,  ``0.11.2-0``,  ``0.10.10-0``,  ``0.10.8-2``,  ``0.10.8-1``,  ``0.10.8-0``,  ``0.10.0-0``,  ``0.8.4-4``,  ``0.8.4-3``,  ``0.8.4-2``,  ``0.8.4-1``,  ``0.8.4-0``,  ``0.8.0-0``,  ``0.7.2-3``,  ``0.7.2-2``,  ``0.7.2-1``,  ``0.7.2-0``,  ``0.6.6a-0``,  ``0.6.5-0``,  ``0.5.5-0``,  ``0.5.3-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.2-0``,  ``0.3.0-0``,  ``0.2.8-0``,  ``0.2.6-0``,  ``0.2.5-0``,  ``0.2.4-0``,  ``0.2.3-0``,  ``0.2.2-0``,  ``0.2.0-0`` .. raw:: html
:depends click: :depends coloredlogs: :depends htslib: ``>=1.15,<1.16.0a0`` :depends libcurl: ``>=7.82.0,<8.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends libzlib: ``>=1.2.11,<1.3.0a0`` :depends numpy: :depends openssl: ``>=1.1.1l,<1.1.2a`` :depends pathlib2: :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install cyvcf2 and update with:: conda update cyvcf2 or use the docker container:: docker pull quay.io/biocontainers/cyvcf2: (see `cyvcf2/tags`_ for valid values for ````) .. |downloads_cyvcf2| image:: https://img.shields.io/conda/dn/bioconda/cyvcf2.svg?style=flat :target: https://anaconda.org/bioconda/cyvcf2 :alt: (downloads) .. |docker_cyvcf2| image:: https://quay.io/repository/biocontainers/cyvcf2/status :target: https://quay.io/repository/biocontainers/cyvcf2 .. _`cyvcf2/tags`: https://quay.io/repository/biocontainers/cyvcf2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cyvcf2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cyvcf2/README.html