:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'cyvcf2'
.. highlight: bash

cyvcf2
======

.. conda:recipe:: cyvcf2
   :replaces_section_title:

   A cython wrapper around htslib built for fast parsing of Variant Call Format \(VCF\) files

   :homepage: https://github.com/brentp/cyvcf2
   :license: MIT
   :recipe: /`cyvcf2 <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cyvcf2>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cyvcf2/meta.yaml>`_

   


.. conda:package:: cyvcf2

   |downloads_cyvcf2| |docker_cyvcf2|

   :versions: 0.11.5-0, 0.11.4-0, 0.11.2-0, 0.10.10-0, 0.10.8-2, 0.10.8-1, 0.10.8-0, 0.10.0-0, 0.8.4-4, 0.8.4-3, 0.8.4-2, 0.8.4-1, 0.8.4-0, 0.8.0-0, 0.7.2-3, 0.7.2-2, 0.7.2-1, 0.7.2-0, 0.6.6a-0, 0.6.5-0, 0.5.5-0, 0.5.3-0, 0.5.1-0, 0.5.0-0, 0.4.2-0, 0.4.1-0, 0.4.0-0, 0.3.2-0, 0.3.0-0, 0.2.8-0, 0.2.6-0, 0.2.5-0, 0.2.4-0, 0.2.3-0, 0.2.2-0, 0.2.0-0
   
   :depends click: 
   :depends coloredlogs: 
   :depends htslib: >=1.9,<1.10.0a0
   :depends libcurl: >=7.64.1,<8.0a0
   :depends libgcc-ng: >=7.3.0
   :depends numpy: 
   :depends openssl: >=1.1.1c,<1.1.2a
   :depends python: >=2.7,<2.8.0a0
   :depends zlib: >=1.2.11,<1.3.0a0
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install cyvcf2

   and update with::

      conda update cyvcf2

   or use the docker container::

      docker pull quay.io/biocontainers/cyvcf2:<tag>

   (see `cyvcf2/tags`_ for valid values for ``<tag>``)


.. |downloads_cyvcf2| image:: https://img.shields.io/conda/dn/bioconda/cyvcf2.svg?style=flat
   :target: https://anaconda.org/bioconda/cyvcf2
   :alt:   (downloads)
.. |docker_cyvcf2| image:: https://quay.io/repository/biocontainers/cyvcf2/status
   :target: https://quay.io/repository/biocontainers/cyvcf2
.. _`cyvcf2/tags`: https://quay.io/repository/biocontainers/cyvcf2?tab=tags







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