:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dammit' .. highlight: bash dammit ====== .. conda:recipe:: dammit :replaces_section_title: :noindex: simple de novo transcriptome annotator :homepage: http://dib-lab.github.io/dammit/ :license: BSD :recipe: /`dammit `_/`meta.yaml `_ .. conda:package:: dammit |downloads_dammit| |docker_dammit| :versions: .. raw:: html
1.2-01.1.1-01.1-01.0-41.0-31.0.rc0-01.0rc2-21.0rc2-00.3.2-0 ``1.2-0``,  ``1.1.1-0``,  ``1.1-0``,  ``1.0-4``,  ``1.0-3``,  ``1.0.rc0-0``,  ``1.0rc2-2``,  ``1.0rc2-0``,  ``0.3.2-0``,  ``0.3-0`` .. raw:: html
:depends bioconductor-seqlogo: :depends busco: ``3.0.2`` :depends doit: ``>=0.29.0`` :depends hmmer: :depends infernal: :depends khmer: ``>=2.1`` :depends last: :depends matplotlib: :depends numexpr: ``>=2.3.1`` :depends numpy: :depends pandas: :depends parallel: :depends python: ``>3`` :depends sh: :depends shmlast: :depends sphinx: ``>1.3.1`` :depends sphinx_rtd_theme: ``>=0.1.9`` :depends transdecoder: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dammit and update with:: mamba update dammit To create a new environment, run:: mamba create --name myenvname dammit with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dammit: (see `dammit/tags`_ for valid values for ````) .. |downloads_dammit| image:: https://img.shields.io/conda/dn/bioconda/dammit.svg?style=flat :target: https://anaconda.org/bioconda/dammit :alt: (downloads) .. |docker_dammit| image:: https://quay.io/repository/biocontainers/dammit/status :target: https://quay.io/repository/biocontainers/dammit .. _`dammit/tags`: https://quay.io/repository/biocontainers/dammit?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dammit/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dammit/README.html