:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dbcan' .. highlight: bash dbcan ===== .. conda:recipe:: dbcan :replaces_section_title: :noindex: Standalone version of dbCAN annotation tool for automated CAZyme annotation :homepage: https://bcb.unl.edu/dbCAN2/ :documentation: https://dbcan.readthedocs.io/en/latest/ :developer docs: https://github.com/linnabrown/run_dbcan :license: GPL3 / GPL-3.0-or-later :recipe: /`dbcan `_/`meta.yaml `_ :links: doi: :doi:`10.1093/nar/gkx894`, doi: :doi:`10.1093/nar/gky418`, doi: :doi:`10.1093/nar/gkad328`, biotools: :biotools:`dbcan2` .. conda:package:: dbcan |downloads_dbcan| |docker_dbcan| :versions: ``4.1.4-0``,  ``4.1.3-0``,  ``4.1.2-0``,  ``4.1.1-0``,  ``4.1.0-0``,  ``4.0.0-0``,  ``3.0.7-0``,  ``3.0.6-0`` :depends biopython: :depends blast: :depends diamond: :depends hmmer: :depends matplotlib-base: :depends natsort: :depends numpy: ``>1.19`` :depends openpyxl: :depends pandas: :depends prodigal: :depends psutil: :depends python: ``>=3.6`` :depends scipy: :depends session-info: :depends tqdm: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dbcan and update with:: mamba update dbcan To create a new environment, run:: mamba create --name myenvname dbcan with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dbcan: (see `dbcan/tags`_ for valid values for ````) .. |downloads_dbcan| image:: https://img.shields.io/conda/dn/bioconda/dbcan.svg?style=flat :target: https://anaconda.org/bioconda/dbcan :alt: (downloads) .. |docker_dbcan| image:: https://quay.io/repository/biocontainers/dbcan/status :target: https://quay.io/repository/biocontainers/dbcan .. _`dbcan/tags`: https://quay.io/repository/biocontainers/dbcan?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dbcan/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dbcan/README.html