:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dbg2olc' .. highlight: bash dbg2olc ======= .. conda:recipe:: dbg2olc :replaces_section_title: :noindex: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies :homepage: https://github.com/yechengxi/DBG2OLC :license: unknown :recipe: /`dbg2olc `_/`meta.yaml `_ .. conda:package:: dbg2olc |downloads_dbg2olc| |docker_dbg2olc| :versions: ``20200723-2``,  ``20200723-1``,  ``20200723-0``,  ``20180222-3``,  ``20180222-2``,  ``20180222-1``,  ``20180222-0``,  ``20160205-1``,  ``20160205-0`` :depends assemblyutility: :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends sparc: :depends sparseassembler: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dbg2olc and update with:: mamba update dbg2olc To create a new environment, run:: mamba create --name myenvname dbg2olc with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dbg2olc: (see `dbg2olc/tags`_ for valid values for ````) .. |downloads_dbg2olc| image:: https://img.shields.io/conda/dn/bioconda/dbg2olc.svg?style=flat :target: https://anaconda.org/bioconda/dbg2olc :alt: (downloads) .. |docker_dbg2olc| image:: https://quay.io/repository/biocontainers/dbg2olc/status :target: https://quay.io/repository/biocontainers/dbg2olc .. _`dbg2olc/tags`: https://quay.io/repository/biocontainers/dbg2olc?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dbg2olc/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dbg2olc/README.html