:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'deepac' .. highlight: bash deepac ====== .. conda:recipe:: deepac :replaces_section_title: :noindex: Predicting pathogenic potentials of novel DNA with reverse\-complement neural networks. :homepage: https://gitlab.com/dacs-hpi/deepac :documentation: https://rki_bioinformatics.gitlab.io/DeePaC/ :license: MIT / MIT :recipe: /`deepac `_/`meta.yaml `_ .. conda:package:: deepac |downloads_deepac| |docker_deepac| :versions: .. raw:: html
0.14.1-00.14.0-00.13.6-00.13.5-00.13.4-00.13.3-00.13.2-00.12.2-00.12.1-0 ``0.14.1-0``,  ``0.14.0-0``,  ``0.13.6-0``,  ``0.13.5-0``,  ``0.13.4-0``,  ``0.13.3-0``,  ``0.13.2-0``,  ``0.12.2-0``,  ``0.12.1-0``,  ``0.12.0-0``,  ``0.11.0-0``,  ``0.10.1-0``,  ``0.9.3-1``,  ``0.9.3-0``,  ``0.9.2-0``,  ``0.9.1-0`` .. raw:: html
:depends bedtools: ``>=2.30.0`` :depends biopython: ``>=1.79`` :depends h5py: ``2.10`` :depends matplotlib-base: ``>=3.5.0`` :depends numpy: ``>=1.19.5`` :depends pandas: ``>=1.3.4`` :depends psutil: ``>=5.8.0`` :depends pybedtools: ``>=0.8.2`` :depends python: ``>=3.7,<3.10`` :depends python-wget: ``>=3.2`` :depends requests: ``>=2.26.0`` :depends scikit-learn: ``>=1.0.1`` :depends scipy: ``>=1.7.3`` :depends seaborn: ``>=0.11.2`` :depends shap: ``>=0.40.0`` :depends statsmodels: ``>=0.13.1`` :depends tensorflow: ``>=2.4.1`` :depends tqdm: ``>=4.62.3`` :depends weblogo: ``>=3.7.8`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install deepac and update with:: mamba update deepac To create a new environment, run:: mamba create --name myenvname deepac with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/deepac: (see `deepac/tags`_ for valid values for ````) .. |downloads_deepac| image:: https://img.shields.io/conda/dn/bioconda/deepac.svg?style=flat :target: https://anaconda.org/bioconda/deepac :alt: (downloads) .. |docker_deepac| image:: https://quay.io/repository/biocontainers/deepac/status :target: https://quay.io/repository/biocontainers/deepac .. _`deepac/tags`: https://quay.io/repository/biocontainers/deepac?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deepac/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/deepac/README.html