:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'deepaccess' .. highlight: bash deepaccess ========== .. conda:recipe:: deepaccess :replaces_section_title: :noindex: A package for training and interpreting an ensemble of neural networks for chromatin accessibility :homepage: https://github.com/gifford-lab/deepaccess-package :documentation: https://pypi.org/project/deepaccess/ :license: MIT / MIT :recipe: /`deepaccess `_/`meta.yaml `_ :links: doi: :doi:`10.1101/2021.02.26.433073` .. conda:package:: deepaccess |downloads_deepaccess| |docker_deepaccess| :versions: ``0.1.3-0``,  ``0.1.2-0``,  ``0.1.1-0``,  ``0.1.0-0`` :depends bedtools: ``>=2.29.2`` :depends keras: ``>=2.4.3`` :depends matplotlib-base: ``>=3.3.3`` :depends numpy: ``>=1.19.0`` :depends python: ``>=3.6`` :depends scikit-learn: ``>=0.24.1`` :depends scipy: ``>=1.6.2`` :depends tensorflow: ``>=2.4`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install deepaccess and update with:: mamba update deepaccess To create a new environment, run:: mamba create --name myenvname deepaccess with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/deepaccess: (see `deepaccess/tags`_ for valid values for ````) .. |downloads_deepaccess| image:: https://img.shields.io/conda/dn/bioconda/deepaccess.svg?style=flat :target: https://anaconda.org/bioconda/deepaccess :alt: (downloads) .. |docker_deepaccess| image:: https://quay.io/repository/biocontainers/deepaccess/status :target: https://quay.io/repository/biocontainers/deepaccess .. _`deepaccess/tags`: https://quay.io/repository/biocontainers/deepaccess?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deepaccess/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/deepaccess/README.html