:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'deepstats' .. highlight: bash deepstats ========= .. conda:recipe:: deepstats :replaces_section_title: :noindex: A statistical and dataviz toolbox for deeptools\, genomic signals\, and more. :homepage: https://github.com/gtrichard/deepStats :license: GPL3 :recipe: /`deepstats `_/`meta.yaml `_ :links: doi: :doi:`10.5281/zenodo.3336593` .. conda:package:: deepstats |downloads_deepstats| |docker_deepstats| :versions: ``0.4-1``,  ``0.4-0``,  ``0.3.1-0``,  ``0.3-0``,  ``0.2-0`` :depends bioconductor-iranges: :depends bioconductor-rsamtools: :depends r-argparse: :depends r-base: ``>=3.5.1`` :depends r-boot: :depends r-cowplot: :depends r-dichromat: :depends r-essentials: :depends r-ggplot2: :depends r-optparse: :depends r-purrr: :depends r-seqinr: :depends r-showtext: :depends r-stringr: :depends r-tidyverse: :depends r-vroom: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install deepstats and update with:: mamba update deepstats To create a new environment, run:: mamba create --name myenvname deepstats with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/deepstats: (see `deepstats/tags`_ for valid values for ````) .. |downloads_deepstats| image:: https://img.shields.io/conda/dn/bioconda/deepstats.svg?style=flat :target: https://anaconda.org/bioconda/deepstats :alt: (downloads) .. |docker_deepstats| image:: https://quay.io/repository/biocontainers/deepstats/status :target: https://quay.io/repository/biocontainers/deepstats .. _`deepstats/tags`: https://quay.io/repository/biocontainers/deepstats?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/deepstats/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/deepstats/README.html