:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dnarrange' .. highlight: bash dnarrange ========= .. conda:recipe:: dnarrange :replaces_section_title: :noindex: Find rearrangements in \"long\" DNA reads relative to a genome sequence :homepage: https://github.com/mcfrith/dnarrange :license: GPL-3.0-or-later :recipe: /`dnarrange `_/`meta.yaml `_ .. conda:package:: dnarrange |downloads_dnarrange| |docker_dnarrange| :versions: ``1.6.1-0``,  ``1.6.0-0``,  ``1.5.3-0``,  ``1.5.2-0``,  ``1.5.1-0``,  ``1.5.0-0``,  ``1.4.6-0`` :depends lamassemble: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dnarrange and update with:: mamba update dnarrange To create a new environment, run:: mamba create --name myenvname dnarrange with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dnarrange: (see `dnarrange/tags`_ for valid values for ````) .. |downloads_dnarrange| image:: https://img.shields.io/conda/dn/bioconda/dnarrange.svg?style=flat :target: https://anaconda.org/bioconda/dnarrange :alt: (downloads) .. |docker_dnarrange| image:: https://quay.io/repository/biocontainers/dnarrange/status :target: https://quay.io/repository/biocontainers/dnarrange .. _`dnarrange/tags`: https://quay.io/repository/biocontainers/dnarrange?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dnarrange/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dnarrange/README.html