:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dnaweaver' .. highlight: bash dnaweaver ========= .. conda:recipe:: dnaweaver :replaces_section_title: :noindex: Python library to find optimal strategies for assembling large DNA constructs. :homepage: https://github.com/Edinburgh-Genome-Foundry/DnaWeaver/ :license: MIT :recipe: /`dnaweaver `_/`meta.yaml `_ .. conda:package:: dnaweaver |downloads_dnaweaver| |docker_dnaweaver| :versions: ``v0.3.7-0`` :depends biopython: :depends blast: :depends dna_features_viewer: :depends dnachisel: :depends flametree: :depends jinja2: :depends networkx: :depends numpy: :depends pandas: :depends proglog: :depends python: ``>=3.6`` :depends weasyprint: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dnaweaver and update with:: mamba update dnaweaver To create a new environment, run:: mamba create --name myenvname dnaweaver with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dnaweaver: (see `dnaweaver/tags`_ for valid values for ````) .. |downloads_dnaweaver| image:: https://img.shields.io/conda/dn/bioconda/dnaweaver.svg?style=flat :target: https://anaconda.org/bioconda/dnaweaver :alt: (downloads) .. |docker_dnaweaver| image:: https://quay.io/repository/biocontainers/dnaweaver/status :target: https://quay.io/repository/biocontainers/dnaweaver .. _`dnaweaver/tags`: https://quay.io/repository/biocontainers/dnaweaver?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dnaweaver/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dnaweaver/README.html