:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dropest' .. highlight: bash dropest ======= .. conda:recipe:: dropest :replaces_section_title: :noindex: Pipeline for initial analysis of droplet\-based single\-cell RNA\-seq data :homepage: https://github.com/hms-dbmi/dropEst/ :license: GPL3 :recipe: /`dropest `_/`meta.yaml `_ .. conda:package:: dropest |downloads_dropest| |docker_dropest| :versions: .. raw:: html
0.8.6-70.8.6-60.8.6-50.8.6-40.8.6-30.8.6-20.8.6-10.8.6-00.8.5-1 ``0.8.6-7``,  ``0.8.6-6``,  ``0.8.6-5``,  ``0.8.6-4``,  ``0.8.6-3``,  ``0.8.6-2``,  ``0.8.6-1``,  ``0.8.6-0``,  ``0.8.5-1``,  ``0.8.5-0`` .. raw:: html
:depends bamtools: ``>=2.5.1,<2.5.2.0a0`` :depends boost: ``>=1.78.0,<1.78.1.0a0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends r-base: ``>=4.2,<4.3.0a0`` :depends r-dplyr: :depends r-ggplot2: :depends r-ks: :depends r-magrittr: :depends r-matrix: :depends r-pcapp: :depends r-rcpp: :depends r-rcppeigen: :depends r-rcppprogress: :depends r-rinside: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dropest and update with:: mamba update dropest To create a new environment, run:: mamba create --name myenvname dropest with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dropest: (see `dropest/tags`_ for valid values for ````) .. |downloads_dropest| image:: https://img.shields.io/conda/dn/bioconda/dropest.svg?style=flat :target: https://anaconda.org/bioconda/dropest :alt: (downloads) .. |docker_dropest| image:: https://quay.io/repository/biocontainers/dropest/status :target: https://quay.io/repository/biocontainers/dropest .. _`dropest/tags`: https://quay.io/repository/biocontainers/dropest?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dropest/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dropest/README.html