:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'dsh-bio' .. highlight: bash dsh-bio ======= .. conda:recipe:: dsh-bio :replaces_section_title: :noindex: Tools for BED\, FASTA\, FASTQ\, GAF\, GFA1\/2\, GFF3\, PAF\, SAM\, and VCF files :homepage: https://github.com/heuermh/dishevelled-bio :license: LGPL version 3 or later :recipe: /`dsh-bio `_/`meta.yaml `_ .. conda:package:: dsh-bio |downloads_dsh-bio| |docker_dsh-bio| :versions: .. raw:: html
2.3-02.2.2-02.2.1-02.2-02.1-02.0.9-02.0.8-02.0.7-02.0.6-0 ``2.3-0``,  ``2.2.2-0``,  ``2.2.1-0``,  ``2.2-0``,  ``2.1-0``,  ``2.0.9-0``,  ``2.0.8-0``,  ``2.0.7-0``,  ``2.0.6-0``,  ``2.0.5-0``,  ``2.0.4-0``,  ``2.0.3-1``,  ``2.0.3-0``,  ``2.0.2-0``,  ``2.0.1-0``,  ``2.0-0``,  ``1.4-0``,  ``1.3.4-0``,  ``1.3.3-0``,  ``1.3.2-0``,  ``1.3.1-0``,  ``1.3-0``,  ``1.2.1-0``,  ``1.2-1``,  ``1.2-0``,  ``1.1-1``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0-0`` .. raw:: html
:depends openjdk: ``>=17`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install dsh-bio and update with:: mamba update dsh-bio To create a new environment, run:: mamba create --name myenvname dsh-bio with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/dsh-bio: (see `dsh-bio/tags`_ for valid values for ````) .. |downloads_dsh-bio| image:: https://img.shields.io/conda/dn/bioconda/dsh-bio.svg?style=flat :target: https://anaconda.org/bioconda/dsh-bio :alt: (downloads) .. |docker_dsh-bio| image:: https://quay.io/repository/biocontainers/dsh-bio/status :target: https://quay.io/repository/biocontainers/dsh-bio .. _`dsh-bio/tags`: https://quay.io/repository/biocontainers/dsh-bio?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dsh-bio/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/dsh-bio/README.html