:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'entrez-direct' .. highlight: bash entrez-direct ============= .. conda:recipe:: entrez-direct :replaces_section_title: :noindex: Entrez Direct \(EDirect\) is an advanced method for accessing the NCBI\'s set of interconnected databases \(publication\, sequence\, structure\, gene\, variation\, expression\, etc.\) from a UNIX terminal window. Functions take search terms from command\-line arguments. Individual operations are combined to build multi\-step queries. Record retrieval and formatting normally complete the process. :homepage: https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/21.6.20240308/README :license: PUBLIC DOMAIN :recipe: /`entrez-direct `_/`meta.yaml `_ .. conda:package:: entrez-direct |downloads_entrez-direct| |docker_entrez-direct| :versions: .. raw:: html
21.6-016.2-116.2-015.6-115.6-013.9-213.9-113.9-013.8-0 ``21.6-0``,  ``16.2-1``,  ``16.2-0``,  ``15.6-1``,  ``15.6-0``,  ``13.9-2``,  ``13.9-1``,  ``13.9-0``,  ``13.8-0``,  ``13.3-0``,  ``11.0-2``,  ``11.0-1``,  ``11.0-0``,  ``10.2-0``,  ``10.0-0``,  ``7.70-2``,  ``7.70-1``,  ``7.70-0``,  ``7.00-1``,  ``7.00-0``,  ``5.80-0``,  ``4.00-1``,  ``4.00-0`` .. raw:: html
:depends wget: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install entrez-direct and update with:: mamba update entrez-direct To create a new environment, run:: mamba create --name myenvname entrez-direct with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/entrez-direct: (see `entrez-direct/tags`_ for valid values for ````) .. |downloads_entrez-direct| image:: https://img.shields.io/conda/dn/bioconda/entrez-direct.svg?style=flat :target: https://anaconda.org/bioconda/entrez-direct :alt: (downloads) .. |docker_entrez-direct| image:: https://quay.io/repository/biocontainers/entrez-direct/status :target: https://quay.io/repository/biocontainers/entrez-direct .. _`entrez-direct/tags`: https://quay.io/repository/biocontainers/entrez-direct?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/entrez-direct/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/entrez-direct/README.html