:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'epic' .. highlight: bash epic ==== .. conda:recipe:: epic :replaces_section_title: :noindex: Chip\-Seq broad peak\/domain finder. :homepage: http://github.com/endrebak/epic :license: GNU General Public License v3 (GPLv3) :recipe: /`epic `_/`meta.yaml `_ .. conda:package:: epic |downloads_epic| |docker_epic| :versions: .. raw:: html
0.2.12-70.2.12-60.2.12-50.2.12-40.2.12-30.2.12-20.2.12-10.2.12-00.2.9-1 ``0.2.12-7``,  ``0.2.12-6``,  ``0.2.12-5``,  ``0.2.12-4``,  ``0.2.12-3``,  ``0.2.12-2``,  ``0.2.12-1``,  ``0.2.12-0``,  ``0.2.9-1``,  ``0.2.9-0``,  ``0.2.8-0``,  ``0.2.7-0``,  ``0.2.5-0``,  ``0.2.4-0``,  ``0.2.2-0``,  ``0.2.1-0``,  ``0.2.0-0``,  ``0.1.28-0``,  ``0.1.27-0``,  ``0.1.26-0``,  ``0.1.25-0``,  ``0.1.24-0``,  ``0.1.20-0``,  ``0.1.17-0`` .. raw:: html
:depends bedtools: :depends docopt: :depends functools32: :depends joblib: :depends libgcc-ng: ``>=10.3.0`` :depends natsort: :depends numpy: :depends pandas: :depends pybigwig: :depends pyfaidx: :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends scipy: :depends typing: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install epic and update with:: mamba update epic To create a new environment, run:: mamba create --name myenvname epic with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/epic: (see `epic/tags`_ for valid values for ````) .. |downloads_epic| image:: https://img.shields.io/conda/dn/bioconda/epic.svg?style=flat :target: https://anaconda.org/bioconda/epic :alt: (downloads) .. |docker_epic| image:: https://quay.io/repository/biocontainers/epic/status :target: https://quay.io/repository/biocontainers/epic .. _`epic/tags`: https://quay.io/repository/biocontainers/epic?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/epic/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/epic/README.html