:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'epic2'
.. highlight: bash

epic2
=====

.. conda:recipe:: epic2
   :replaces_section_title:

   Ultraperformant Chip\-Seq broad domain finder based on SICER.

   :homepage: http://github.com/endrebak/epic2
   :license: MIT
   :recipe: /`epic2 <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/epic2>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/epic2/meta.yaml>`_
   :links: doi: :doi:`10.1093/bioinformatics/btz232`

   


.. conda:package:: epic2

   |downloads_epic2| |docker_epic2|

   :versions: 0.0.41-1, 0.0.41-0, 0.0.40-0, 0.0.39-0, 0.0.37-0, 0.0.36-0, 0.0.35-0, 0.0.34-0, 0.0.33-0, 0.0.26-0, 0.0.16-0, 0.0.15-0
   
   :depends functools32: 
   :depends htslib: >=1.9,<1.10.0a0
   :depends libgcc-ng: >=7.3.0
   :depends libstdcxx-ng: >=7.3.0
   :depends natsort: 
   :depends numpy: 
   :depends pysam: 
   :depends python: >=2.7,<2.8.0a0
   :depends scipy: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install epic2

   and update with::

      conda update epic2

   or use the docker container::

      docker pull quay.io/biocontainers/epic2:<tag>

   (see `epic2/tags`_ for valid values for ``<tag>``)


.. |downloads_epic2| image:: https://img.shields.io/conda/dn/bioconda/epic2.svg?style=flat
   :target: https://anaconda.org/bioconda/epic2
   :alt:   (downloads)
.. |docker_epic2| image:: https://quay.io/repository/biocontainers/epic2/status
   :target: https://quay.io/repository/biocontainers/epic2
.. _`epic2/tags`: https://quay.io/repository/biocontainers/epic2?tab=tags







Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

   [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/epic2/README.html)

.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/epic2/README.html