:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'estmapper' .. highlight: bash estmapper ========= .. conda:recipe:: estmapper :replaces_section_title: :noindex: Software package for the high\-throughput alignment of large cDNA \(EST\, mRNA\) sequence sets to a large eukaryotic genome of the same species. :homepage: http://kmer.sourceforge.net/wiki/index.php/Getting_Started_with_ESTmapper :license: GPL :recipe: /`estmapper `_/`meta.yaml `_ .. conda:package:: estmapper |downloads_estmapper| |docker_estmapper| :versions: ``2008-6``,  ``2008-5``,  ``2008-4``,  ``2008-3``,  ``2008-2``,  ``2008-1``,  ``2008-0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install estmapper and update with:: mamba update estmapper To create a new environment, run:: mamba create --name myenvname estmapper with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/estmapper: (see `estmapper/tags`_ for valid values for ````) .. |downloads_estmapper| image:: https://img.shields.io/conda/dn/bioconda/estmapper.svg?style=flat :target: https://anaconda.org/bioconda/estmapper :alt: (downloads) .. |docker_estmapper| image:: https://quay.io/repository/biocontainers/estmapper/status :target: https://quay.io/repository/biocontainers/estmapper .. _`estmapper/tags`: https://quay.io/repository/biocontainers/estmapper?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/estmapper/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/estmapper/README.html