:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'eukulele' .. highlight: bash eukulele ======== .. conda:recipe:: eukulele :replaces_section_title: :noindex: Easy taxonomic annotation for eukaryotic microbes :homepage: https://github.com/AlexanderLabWHOI/EUKulele :license: MIT :recipe: /`eukulele `_/`meta.yaml `_ .. conda:package:: eukulele |downloads_eukulele| |docker_eukulele| :versions: .. raw:: html
2.0.7-02.0.6-02.0.5-02.0.3-32.0.3-02.0.2-02.0.1-12.0.1-01.0.6-0 ``2.0.7-0``,  ``2.0.6-0``,  ``2.0.5-0``,  ``2.0.3-3``,  ``2.0.3-0``,  ``2.0.2-0``,  ``2.0.1-1``,  ``2.0.1-0``,  ``1.0.6-0``,  ``1.0.4-0``,  ``1.0.2-1``,  ``1.0.2-0`` .. raw:: html
:depends biopython: ``1.78`` :depends blast: ``2.2.31`` :depends boost-cpp: :depends chardet: :depends diamond: ``0.9.24`` :depends joblib: :depends matplotlib-base: ``3.3.3`` :depends numpy: ``1.19.5`` :depends pandas: ``1.2.0`` :depends python: ``>=3.6`` :depends pyyaml: :depends seaborn-base: :depends ujson: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install eukulele and update with:: mamba update eukulele To create a new environment, run:: mamba create --name myenvname eukulele with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/eukulele: (see `eukulele/tags`_ for valid values for ````) .. |downloads_eukulele| image:: https://img.shields.io/conda/dn/bioconda/eukulele.svg?style=flat :target: https://anaconda.org/bioconda/eukulele :alt: (downloads) .. |docker_eukulele| image:: https://quay.io/repository/biocontainers/eukulele/status :target: https://quay.io/repository/biocontainers/eukulele .. _`eukulele/tags`: https://quay.io/repository/biocontainers/eukulele?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/eukulele/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/eukulele/README.html