:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'exparna' .. highlight: bash exparna ======= .. conda:recipe:: exparna :replaces_section_title: :noindex: The program finds the longest common subsequence of exact pattern matches \(LCS\-EPM\) :homepage: https://github.com/BackofenLab/ExpaRNA :license: GPL-2.0 :recipe: /`exparna `_/`meta.yaml `_ :links: biotools: :biotools:`exparna` .. conda:package:: exparna |downloads_exparna| |docker_exparna| :versions: ``1.0.1-6``,  ``1.0.1-5``,  ``1.0.1-4``,  ``1.0.1-3``,  ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends perl: ``>=5.32.1,<5.33.0a0 *_perl5`` :depends viennarna: ``>=2.5.1,<2.6.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install exparna and update with:: mamba update exparna To create a new environment, run:: mamba create --name myenvname exparna with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/exparna: (see `exparna/tags`_ for valid values for ````) .. |downloads_exparna| image:: https://img.shields.io/conda/dn/bioconda/exparna.svg?style=flat :target: https://anaconda.org/bioconda/exparna :alt: (downloads) .. |docker_exparna| image:: https://quay.io/repository/biocontainers/exparna/status :target: https://quay.io/repository/biocontainers/exparna .. _`exparna/tags`: https://quay.io/repository/biocontainers/exparna?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/exparna/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/exparna/README.html